Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6074 194 2e-44 seq3162 179 4e-40 seq356 132 5e-26 seq1161 89.7 6e-13 seq954 84.2 2e-11 >seq6074 Length=24291 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| ||| | || Sbjct 4792 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 4733 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||| ||||||||||| || ||||| ||||||||| Sbjct 4732 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4673 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 4672 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 4613 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||||| || ||||| ||| ||||||| | ||||| || Sbjct 4612 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGGCA 4563 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || || ||||| ||| | | Sbjct 3957 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAGC 3898 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||| ||||||||||| || ||||| ||||||||| Sbjct 3897 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 3838 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 3837 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3778 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||||| || ||||| ||| ||||||| | ||||| || Sbjct 3777 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGGCA 3728 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| ||| | | Sbjct 5020 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4961 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||| ||||||||||| || ||||| ||||||||| Sbjct 4960 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4901 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 4900 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 4841 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| ||||||| | ||||| Sbjct 4840 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 4794 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||||||||| || ||||| |||||||||||| | || || |||||||| ||||| Sbjct 4098 ATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAG 4039 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || |||| || ||||| | ||||| || |||| ||||| ||||| || ||||| Sbjct 4038 CTGGAAGATGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTT 3979 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 ||| ||||||| | ||||| Sbjct 3978 GTCCTGCGTCTGAGGGGTGG 3959 >seq3162 Length=48913 Score = 179 bits (198), Expect = 4e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || || |||||||| || ||| | ||||||||| | | Sbjct 2359 AATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCAG 2418 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| |||| | || || || || ||||| |||||||| || ||||||||||| Sbjct 2419 TGACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCA 2478 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2479 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 2538 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| || | ||||| Sbjct 2539 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCT 2577 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||||||| || || Sbjct 2816 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 2875 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || || ||||| ||||| || || |||||||||||| Sbjct 2876 GACACTATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 2935 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2936 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2995 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| || || || ||| | ||||| || || ||| Sbjct 2996 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCCGTGGAGGA 3043 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 2588 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2647 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| || || ||||| ||||| || || |||||||||||| Sbjct 2648 GACACTATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 2707 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2708 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2767 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || |||||||| || || || ||| | ||||| Sbjct 2768 ATCCAGAAAGAATCCACACTCCACCTGGTCCTCCGTCT 2805 >seq356 Length=191405 Score = 132 bits (146), Expect = 5e-26 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| ||| | ||||||||||| ||||||||||| || ||||| |||||||||||| | Sbjct 11289 CATTGAGAATGTTAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAGAG 11348 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 || || ||||| || ||||| || || |||| || ||||| | ||||| || |||| Sbjct 11349 GCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACATCCA 11408 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 ||||| ||||| || ||||| ||| ||||||| | || || ||| Sbjct 11409 GAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGCGGTCAA 11454 >seq1161 Length=118247 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| |||||||||| ||| || || || || ||||| || | |||||| Sbjct 53940 ACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGC 53881 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || |||||||| || ||| |||| Sbjct 53880 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTCTGTCTGAGACT 53821 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | || |||| ||| | || | ||||| ||||| Sbjct 53820 CAATTATAGCGTACCACACCTGCTGAGCCTTCACCAC 53784 >seq954 Length=418004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| || ||| | || ||||||||||| || || ||| ||||| | || ||||| Sbjct 298057 ACCATAGTGAACTTGGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCCA 297998 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 || |||||||| || || || || ||||| |||||||| ||| | ||||||||| Sbjct 297997 CTGGGTCAGTTTGGTACTCGCATCAATGGAGGCAAAGATGCTGCCAGCCCTCGTTACATC 297938 Query 32245 TTCACC 32250 |||||| Sbjct 297937 TTCACC 297932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570180668641760