Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq415 114 2e-20 >seq415 Length=356447 Score = 114 bits (126), Expect = 2e-20 Identities = 241/354 (68%), Gaps = 8/354 (2%) Strand=Plus/Plus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 ||||||||||| |||||||| || |||||||| | ||||| |||||||| ||||| || Sbjct 29113 GAGTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAGCGACTT 29172 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 || | || | ||||| || |||||| ||||||| || ||||||||| || ||| Sbjct 29173 CTACGAGCTGTTTACGCTCCTCAGAACATCTACTGTGTGCACGTGGACCAGAAATCCTCT 29232 Query 13812 GACGAGTTCATCCG--GGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGG 13869 | || || || | || || ||| || ||||| ||||| ||| ||| Sbjct 29233 AAAGAATT--TCAGAAGGCTGTGGAGGCAATTATTTCCTGCTTTCCTAATGTG--TTTGG 29288 Query 13870 -CCCACCGGCTGCACGAC-GTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAG 13927 ||| | | || ||| | || | ||| ||| || |||||||| || | | Sbjct 29289 AGCCAGTAGATTAGAAACAGTGATATATGCCTCATGGTCCCGAGTGCAGGCAGATTTGAA 29348 Query 13928 CTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGG 13987 ||||||| || ||| ||| | ||| ||||||||||||| || ||| ||||| Sbjct 29349 CTGCATGAAAGATCTGCTGAGCTCACATGTCCAGTGGAGGTACCTTCTTAACACCTGCGG 29408 Query 13988 GATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCT 14041 || |||||||| |||| ||||| ||||| || | ||| ||||| ||||| Sbjct 29409 GACAGACTTCCCCATCAAAACCAATGGAGAGATGGTTCAGGCACTGAAAGCCCT 29462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658589353300480