Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3162 114 8e-21 seq6074 105 4e-18 >seq3162 Length=48913 Score = 114 bits (126), Expect = 8e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | ||| | |||||| ||| |||||| || ||||| || || || Sbjct 2587 GCCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2528 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | |||||| ||||| || || Sbjct 2527 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 2468 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||||| ||| | | ||| ||||| | ||| || Sbjct 2467 GATGCCCTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAAC 2408 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| || || || || || || | || ||||||||||||||||| |||| Sbjct 2407 CTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTTGA 2355 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| ||||| ||| || || || ||||| || || || Sbjct 2815 GCCTCCCCTCAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGA 2756 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | |||||| ||||| || || Sbjct 2755 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 2696 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || ||||| || |||||| | || || | ||| ||||| | ||| | Sbjct 2695 GATGCCTTCCTTATCCTGGATCTTG-GCCTTCACATTCTCAATAGTGTCACTGGGCTCAA 2637 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || || || | || |||||||||||||||||| Sbjct 2636 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATG 2587 >seq6074 Length=24291 Score = 105 bits (116), Expect = 4e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| || | |||||| ||| |||||| || ||||| || || || Sbjct 4793 GCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4852 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || ||||| |||||||| || | | ||| ||||| || || Sbjct 4853 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 4912 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||| ||| | || || | ||| ||||| | ||||| Sbjct 4913 AATGCCTTCCTTGTCCTGGAT-TTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCA 4971 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| ||| || || || || || | || || ||||| ||||||||||| Sbjct 4972 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 5023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314659796712134