Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq112 120 3e-22 >seq112 Length=268450 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || || || || || || ||||| |||||||| | ||| Sbjct 20168 TGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCTATATTGAAAGGCACCCCCAGGCCC 20227 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || ||||| || || || ||||| || |||||||| |||| |||||||| || Sbjct 20228 ATATCACCCGAACGCTGGTACAGCTGACACGACAGCTCACCATCACACACGTAGAACTGA 20287 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| ||||| || ||||| ||||| || || Sbjct 20288 CACAGGGCGTGGCAGGGGGGCAGAGCCATGAGAGGCAGGTC 20328 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || ||||| ||||| || ||||| |||||| |||| || || |||||||| || Sbjct 20328 GACCTGCCTCTCATGGCTCTGCCCCCCTGCCACGCCCTGTGTCAGTTCTACGTGTGTGAT 20269 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||||| || || || ||||| || ||||| | |||||||| ||| Sbjct 20268 GGTGAGCTGTCGTGTCAGCTGTACCAGCGTTCGGGTGATATGGGCCTGGGGGTGCCTTTC 20209 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || || || || || || ||||||||||| || Sbjct 20208 AATATAGCCAGCTATGCACTTCTTACCTACATGATCGCACA 20168 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||||||||| || || || || |||| |||||| ||||| Sbjct 21407 TACTCGGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCTTCCTCT 21466 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| || | |||||||| ||||| || ||||| | || ||||| ||||| Sbjct 21467 CTATCAGTGAAGCCAAGGTTGTCCAGGAAGTCCCGGGACCCATTGGCATCCCAAATCTTT 21526 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 ||||| | |||||||||||||| Sbjct 21527 ACCCCTTTCGCCGAGAGCTCCTTGG 21551 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||||||||||||| | ||||| ||||| ||||| || | ||||| || ||||| | Sbjct 21551 CCAAGGAGCTCTCGGCGAAAGGGGTAAAGATTTGGGATGCCAATGGGTCCCGGGACTTCC 21492 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 ||||||| | || ||| | | | ||||| |||||| |||| || || || || |||| Sbjct 21491 TGGACAACCTTGGCTTCACTGATAGAGAGGAAGGCGACCTGGGACCTGTGTATGGTTTCC 21432 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || ||||| Sbjct 21431 AGTGGAGGCACTTTGGTGCCGAGTA 21407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448160431510560