Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3162 176 1e-38 seq6074 167 5e-36 seq356 125 2e-23 seq1734 100 7e-16 seq503 86.0 1e-11 >seq3162 Length=48913 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 2571 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2512 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || ||||| ||||| | || ||||| ||| Sbjct 2511 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCC 2452 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || ||||| ||||||||| | |||||||| | |||||| ||| Sbjct 2451 TGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTC 2392 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 2391 TTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTT 2357 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 2799 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2740 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || ||||| ||||| | |||||||| ||| Sbjct 2739 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 2680 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || || |||||| | |||||||| || ||||| ||| Sbjct 2679 TGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2620 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 2619 TTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 2588 Score = 168 bits (186), Expect = 2e-36 Identities = 175/228 (77%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| || |||||||| || |||||||| || || | || Sbjct 3040 TCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAG 2981 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||||||||||||||| || ||||| || || || ||||| ||||| | Sbjct 2980 GGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGAT 2921 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAAC 211066 |||||||| ||||||||||| |||||||| || || |||||| ||| ||||| Sbjct 2920 GCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCA---CTTGGCTCAAC 2864 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| ||||| || || || ||||| || || | |||||| Sbjct 2863 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2816 >seq6074 Length=24291 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 4581 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 4640 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 4641 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4700 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || ||||| || ||||| ||| Sbjct 4701 TGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 4760 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 4761 TTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 4792 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 3746 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 3805 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 3806 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 3865 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || |||||||| | || ||||| || ||||| ||| Sbjct 3866 TGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 3925 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 3926 TTACCAGTGAGGGTCTTGACGAAGATCTGCAT 3957 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 4809 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 4868 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 4869 TCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4928 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || |||||||| | || ||||| || ||||| ||| Sbjct 4929 TGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 4988 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 4989 TTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 5023 Score = 118 bits (130), Expect = 2e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 3974 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 4033 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 4034 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4093 Query 211023 TGGAT 211027 ||||| Sbjct 4094 TGGAT 4098 >seq356 Length=191405 Score = 125 bits (138), Expect = 2e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 11435 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 11376 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 11375 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 11316 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 ||||| || || || || || |||||||| Sbjct 11315 TGGATTTTAGCCTTAACATTCTCAATGGTGTC 11284 >seq1734 Length=113051 Score = 100 bits (110), Expect = 7e-16 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||| ||||| |||||| Sbjct 106406 GGCAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGACACAAC 106347 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | ||| |||| | ||| |||| |||| | Sbjct 106346 TATGTGAGAAAAGTGGCTGAGACGGCTGTCCAGCTTTTTGTGTCCAACGACA--AAGT-T 106290 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || || || || || || || |||||||| ||||| | ||| Sbjct 106289 AATGTGGCAGGAATGGTCTTAGCTGGCTCTGCCGACTTCAAGACCGAGCTCAGCCAGTCT 106230 Query 139999 GACTTTTTTGACCCG 140013 ||| | ||||||||| Sbjct 106229 GACATGTTTGACCCG 106215 >seq503 Length=161451 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||||||| || || |||||||| ||||| | |||||||| Sbjct 72317 CCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATAGTGTCGCTGGGCTCAACCTCA 72258 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||| | ||||| || || | |||||| || Sbjct 72257 AGGGTGATGGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCATGTT 72211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158881729946270