Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3162 109 4e-19 seq6074 104 2e-17 >seq3162 Length=48913 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || || ||||| || || || || |||||| | || ||||| || Sbjct 2357 AAAATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCC 2416 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | ||| || || || || || || | || ||||| Sbjct 2417 AGTGACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGAC 2476 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || ||||| ||||| || |||||||| | ||||| | ||| ||| Sbjct 2477 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 2536 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 2537 AACATCCAGAAGGAGTCCAC 2556 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || ||||| || || ||||| ||| Sbjct 2588 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2647 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || || || || ||||| | || ||||| || Sbjct 2648 GACACTATTGAGAATGTGAAGGC-CAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCA 2706 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || |||||||| | ||||| | ||| ||||| Sbjct 2707 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 2766 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || ||||| |||||| Sbjct 2767 CATCCAGAAAGAATCCACA 2785 >seq6074 Length=24291 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || |||||||| || || || ||||| || || || || || Sbjct 5023 AACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 4964 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | |||| | ||||| ||||| | || ||||| Sbjct 4963 AGCGACACCATTGAGAATGTCAAGGCTAAAA-TCCAGGACAAGGAAGGCATTCCCCCAGA 4905 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || |||||||||||||| |||||||| | ||||| | || || Sbjct 4904 CCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTA 4845 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 4844 CAACATCCAGAAGGAGTCCAC 4824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337934633484584