Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq112 116 3e-21 seq3956 107 2e-18 >seq112 Length=268450 Score = 116 bits (128), Expect = 3e-21 Identities = 124/160 (78%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || ||||| ||||||||||| || || || || | |||| Sbjct 21419 AAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCTTCCTCTCTATCAGTGAAG 21478 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| ||||| | ||| || ||||| ||||| ||||||||||| ||| | Sbjct 21479 CCAAGGTTGTCCAGGAAGTCCCGGGACCCATTGGCATCCCAAATCTTTACCCCTTTCGCC 21538 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30176 |||||||| |||| ||||| || || ||| || |||||| Sbjct 21539 GAGAGCTCCTTGGCATTTGTTGATCC-CTG-CG-ACCACA 21575 >seq3956 Length=75287 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 114288 GCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGG 114347 |||||||||||||||| | ||| | ||||| |||||||||| ||||| || ||||||| Sbjct 45300 GCTCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGG 45241 Query 114348 AGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 | ||||| ||||| || ||||| || ||||| |||||||| ||| Sbjct 45240 AAAACCACGTCTTCCTGCCCATGATGACCACATTCTGCTTGCCT 45197 Score = 100 bits (110), Expect = 2e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| || |||||||| ||||||| | | || |||||||| |||| ||| |||||| || Sbjct 41346 AGTCTAACAGGATGCCAGGGCAGATTTTCATTTTTCCCGATACCCAGGTCAGGACACACT 41287 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATG 114532 ||||||||| ||||||||||| ||| |||| Sbjct 41286 GCCACGATAGCGTTCAGAATGCGGGACATG 41257 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 |||||||||| ||||||||| | ||| |||| | || ||||| || |||| ||| ||| Sbjct 49499 ACTCTGGCAGAAGACGATATTTGTCTGGACTGATTTCAGGGAGGAATGTGTCACACTCAA 49440 Query 114102 ATTGCGTC--GACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTC 114159 | ||| || || |||| ||| ||||| ||| | ||||||||||||||||| | ||| Sbjct 49439 ACTGCTTCAGGATTCGTG--TGATGAACAGTCTCCTGGTCCCCGGGCTCTCCATCAACTC 49382 Query 114160 C 114160 | Sbjct 49381 C 49381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406073117825428