Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq112 143 2e-29 seq5535 132 4e-26 >seq112 Length=268450 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | |||||||| || || || || Sbjct 20156 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCTATATTGAAAGGC 20215 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || ||||| || ||||| | |||||| ||||||||||| ||||| ||||| | Sbjct 20216 ACCCCCAGGCCCATATCACCCGAACGCTGGTACAGCTGACACGACAGCTCACCATCACAC 20275 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| |||||||| | ||||||||| || || ||||||||||| Sbjct 20276 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAG 20319 Score = 125 bits (138), Expect = 5e-24 Identities = 135/175 (77%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 27496 GTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 27555 |||||||| || || || |||||||| ||||| || ||||| ||||||||||| || || Sbjct 21404 GTGTACTCGGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCTTCC 21463 Query 27556 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 27615 || || | |||||| ||||||| ||||| | ||| || ||||| ||||| ||| Sbjct 21464 TCTCTATCAGTGAAGCCAAGGTTGTCCAGGAAGTCCCGGGACCCATTGGCATCCCAAATC 21523 Query 27616 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 27670 |||||||| ||| | |||||||| |||| ||||| || || ||| || |||||| Sbjct 21524 TTTACCCCTTTCGCCGAGAGCTCCTTGGCATTTGTTGATCC-CTG-CG-ACCACA 21575 >seq5535 Length=27051 Score = 132 bits (146), Expect = 4e-26 Identities = 178/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 |||||| || |||||||| || || | ||| || | |||||||| | ||| Sbjct 19997 GGTGAATGGGTGGGGAAAATTCTACCTTCCCGAGATGGTAAGCATGCAGGTTGTAGGTGT 20056 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 |||||||| || | | | |||||||| || || ||||||||||| |||||| || Sbjct 20057 AGTGACGGGGACCTCGTGTCCGTGTGACCAACTCGTTCTGATGACCTGTGAGGACAGAAA 20116 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAG--ATG 69251 | |||| | ||| | ||||| |||||||||| ||||||| | ||||| || ||| Sbjct 20117 GCTGTATGCCTACAATGGAGAGGAGCTGCATGAGGTGGCTTCAAGCCTGGAGGAGCTATG 20176 Query 69252 GGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAA 69311 | ||| || |||| ||||| |||| | |||||||||| ||||||||||||||||| Sbjct 20177 TCGCAAG--GGCATAGAGTATCCAGCATCCAAGAGCTATTACGATGGGGAGGCCTTCAAA 20234 Query 69312 CATATG 69317 ||| || Sbjct 20235 CATTTG 20240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369425247690938