Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4239 464 9e-126 seq1161 93.3 6e-14 seq49 84.2 3e-11 >seq4239 Length=33969 Score = 464 bits (514), Expect = 9e-126 Identities = 1287/1961 (66%), Gaps = 23/1961 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| |||||| || | || | || ||||| ||||| Sbjct 29864 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGTGGATTC 29923 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 29924 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCTTCA 29983 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | ||| |||||||| |||| || || || || || || || ||||| || |||| || Sbjct 29984 ATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 30043 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | ||| || || | || || | || || || || || ||||| ||| || Sbjct 30044 AGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGG 30103 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | ||| ||||| | ||||| || || || ||||| || | || || Sbjct 30104 TCGGTGGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCGTTGCTGACGGGAGAGCCT 30163 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || ||||| || || || | | || || || || || || |||| || Sbjct 30164 TCGTACGTCTCATAGGGGCCAAGCTCAG---CCGCCAGCTCGCAGCTTGCCTCCAGGGCG 30220 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 |||| || || || || || |||| | || || || || || || || ||| Sbjct 30221 GCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAAC 30280 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || ||| | | || || |||||||| || || ||||| || || || || || || || Sbjct 30281 GGGTAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATTGGCCTG 30340 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | ||| ||||| ||| ||||| || | ||||| | ||||| || || || || Sbjct 30341 TGACGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATAGAAGTTAATCTCAATTATCTTG 30400 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC 77655 || | ||| | || | |||||| ||| | | |||||| ||| ||||| ||| | Sbjct 30401 TTTAAGTTTTTGACTATTACTTTGGTCACATACGCTAGTTTCTTAAAGTCAAAAGTCTGC 30460 Query 77656 -CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | || ||||||| | || || || || |||||||| || || ||||||| Sbjct 30461 TCAGGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCG 30520 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | ||| |||| || || || || || || || || | ||||| ||||| ||||| Sbjct 30521 TGGCTGGTGTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTC 30580 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| | ||||| | |||||| || || || | || || |||||||| Sbjct 30581 TGCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCT 30640 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATCG 77893 |||| || |||||||| | | ||| | | || ||| || | || ||| | Sbjct 30641 GTCTGGGACTCGATAATGGCGTGCCACAGCTGCT-GAGCCTTCACCAAGCGCTTGACCCT 30699 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| | |||||| ||||| ||| ||||| || || ||||| || |||| Sbjct 30700 CCCCTCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAG 30759 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCA 78012 || ||||| ||| |||| ||||||| |||||||| | | | || |||| |||| Sbjct 30760 CCCCGGGCACTCACTTGGACACATCAGAGACCAGTCTTGGT-TGCTTTCCACTCTCTTCA 30818 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 | || || || || ||||| | || || ||||||| || ||| || || || |||| Sbjct 30819 TGAACAGGTCGGGGATCCACATGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTC 30878 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 |||| ||||| || || || || || || | | |||| | ||||| || || || || | Sbjct 30879 CTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACA 30938 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || | |||| || | || || || ||||| || | ||| | || ||||| |||| Sbjct 30939 TGGCAAAGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTAT 30998 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 ||||||||| ||| || | | || || || | || ||||| |||| || || || | Sbjct 30999 AAACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCC 31058 Query 78253 CACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 | ||| | || || | | | || |||||||| || ||| || || || | Sbjct 31059 CCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGG 31118 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372 | || | |||| || || || || || || || ||||| || ||||| || || | Sbjct 31119 CACATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGA 31178 Query 78373 AACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 | ||||| |||| || || || |||||||| || || | || || || || Sbjct 31179 AGCAGCTGGACAGCTGTGGCCTGTTG----GTTCCTGCGTTGAAGAGCGTAGGGGAGGCG 31234 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || || ||||| || || || | || ||||| || || || |||| || || ||| | Sbjct 31235 TGGGTGAACCACTTCTCTGACAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTT 31294 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | || || || || || || | ||| | ||| ||||| || | || || || | Sbjct 31295 TTGTGGATCCCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCA 31354 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || || ||||||| ||| || |||| || || || ||||| ||||||| | || Sbjct 31355 TTGATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAA 31414 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATG 78668 |||| ||| |||| || | || || || ||||| | | |||||| || | | Sbjct 31415 TCTCGGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTATTCTCAAGAACAATGTCGA-G 31473 Query 78669 ACAGTAGTT-GAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAA 78727 | || || || || ||||| | |||| || || || ||||| || | Sbjct 31474 CGTCTCCTTGGAGATCATGGGAGAGTGGCGTTTATTTAAGGGGTTGACGTAGTTGAACAG 31533 Query 78728 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTAT 78787 || ||||| |||||||| || | || || || || ||||| || || || || || || Sbjct 31534 GTCCTCCATCACATCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGAT 31593 Query 78788 TCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGC 78847 | || || || || ||||| || || |||| || || |||||| || || ||||| Sbjct 31594 GCGCGCGGCGAGGATGGCATAGTCGGGGTGTTTAGTGGTGAGAGTGGCGGCGATCTCTGC 31653 Query 78848 CGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 || | | || | ||| | || ||||| ||| | || || || || || || ||||| Sbjct 31654 TGCCAGTGTGTCGAGCTCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31713 Query 78908 GGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACG 78967 | || | | | ||||| ||||| |||| ||||| || || || | || || || Sbjct 31714 CGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGGCCGTAGCACAGCTTCTGGATGCG 31773 Query 78968 AGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||| ||||||||||| || || || ||| | || ||||| Sbjct 31774 AGAGGTGATTTTATCGAACATGACGCGCTCTTGGCGTCCAT 31814 >seq1161 Length=118247 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| | Sbjct 53932 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 53873 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| | |||||| || || || | || || |||||||| |||| || || || ||| Sbjct 53872 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTCTGTCTGAGACTCAATTATA 53813 Query 77853 G 77853 | Sbjct 53812 G 53812 >seq49 Length=318415 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || ||||| | ||||| || | || || || ||||||||||| | || ||| Sbjct 81305 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 81364 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 |||||| | || || ||||| || || || ||||| ||||| || || || ||||| || Sbjct 81365 AGCCAATAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAGCC 81424 Query 48285 GTAAGTCTCTCTCC 48298 ||||| ||| || Sbjct 81425 ACAAGTCGCTCCCC 81438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694510780214720