Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4239 464 9e-126 seq49 98.7 1e-15 seq1161 93.3 6e-14 >seq4239 Length=33969 Score = 464 bits (514), Expect = 9e-126 Identities = 1277/1945 (66%), Gaps = 25/1945 (1%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| ||||| || | || | || ||||| ||||| Sbjct 29864 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGTGGATTC 29923 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 29924 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCTTCA 29983 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | ||| |||||||| |||| || || || || || || || ||||| || |||| || Sbjct 29984 ATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 30043 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | ||| || || | || || | || || || || || ||||| ||| || Sbjct 30044 AGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGG 30103 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | ||| ||||| | ||||| || || || |||||||| | || || Sbjct 30104 TCGGTGGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCGTTGCTGACGGGAGAGCCT 30163 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || || || | || || | || || ||||| || ||||| | || || Sbjct 30164 TCGTACGTCTCATAGGGGCCAAGCTCAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCG 30223 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || || || || || |||| | || || || || || | || || || || Sbjct 30224 TAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGG 30283 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | || || || ||||| || | ||||| || || || || || || || || Sbjct 30284 TAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGA 30343 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| |||| ||||| || | || || | ||||| || || || || || Sbjct 30344 CGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATAGAAGTTAATCTCAATTATCTTGTTT 30403 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TTTTC-CA 76252 | ||| |||| | |||||| ||| | | |||||| ||| ||||| | | | || Sbjct 30404 AAGTTTTTGACTATTACTTTGGTCACATACGCTAGTTTCTTAAAGTCAAAAGTCTGCTCA 30463 Query 76253 TCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAG 76310 | || |||| || || || || || || |||||||| || || ||||||| | | Sbjct 30464 GGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGG 30523 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||| |||| || || || ||||| || || || | |||||| || || ||||| | Sbjct 30524 C--TGGTGTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCT 30581 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | ||||||||||| |||| || | |||||| || || | | || || || ||||| Sbjct 30582 GCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTG 30641 Query 76431 TCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATTATAGATTTGTATCGC 76489 |||| || |||||||| | | ||| | | || ||| || | | ||| | | Sbjct 30642 TCTGGGACTCGATAATGGCGTGCCACAGCTGCT-GAGCCTTCACCAAGCGCTTGACCCTC 30700 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| | |||||| ||||| | | ||||| || || ||||| || |||| Sbjct 30701 CCCTCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGC 30760 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCAT 76608 || || || ||| | |||||||||| ||||| || | | | || || | ||||| Sbjct 30761 CCCGGGCACTCACTTGGACACATCAGAGACCAGTCTTGGT-TGCTTTCCACTCTCTTCAT 30819 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 || || || || ||||| | || || ||||||| || ||| | || || ||||| Sbjct 30820 GAACAGGTCGGGGATCCACATGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCC 30879 Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728 ||| ||||| || || || ||||| || | | |||| | ||||| || || || || || Sbjct 30880 TGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACAT 30939 Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 || | | || || | || || || ||||| || | ||| | || ||||| ||||| Sbjct 30940 GGCAAAGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATA 30999 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 |||||||| ||| || | | || || || | || ||||| |||| || || || || Sbjct 31000 AACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCC 31059 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 || | || || | | | ||| |||||||| || || ||||| || || Sbjct 31060 CGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGC 31119 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 ||| | |||| |||||||| ||||| || || || || || ||||| || || || Sbjct 31120 ACATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAA 31179 Query 76969 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 ||||| |||| || || || |||||||| || || | ||||| || || | Sbjct 31180 GCAGCTGGACAGCTGTGGCCTGTTG----GTTCCTGCGTTGAAGAGCGTAGGGGAGGCGT 31235 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 | |||||||| || || || | || ||||| || || || |||| || |||||| || Sbjct 31236 GGGTGAACCACTTCTCTGACAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTT 31295 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 || || || ||||| || | ||| | ||| ||||| || || || | || || Sbjct 31296 TGTGGATCCCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCAT 31355 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204 | || ||||||| ||| || |||| || || || ||||| ||||||| | || | Sbjct 31356 TGATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAAT 31415 Query 77205 CTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGA 77264 ||| ||| |||| || |||| || || ||| |||| | |||||| || || Sbjct 31416 CTCGGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTATTCTCAAGAACAATGTC---GA 31472 Query 77265 CAGT---GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATA 77321 || | || || || ||||| | | |||| || || || ||||| || | Sbjct 31473 GCGTCTCCTTGGAGATCATGGGAGAGTGGCGTTTATTTAAGGGGTTGACGTAGTTGAACA 31532 Query 77322 AGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTA 77381 ||| ||||| || || || || | || || || || ||||| || || || ||||| | Sbjct 31533 GGTCCTCCATCACATCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGA 31592 Query 77382 TTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTG 77441 | | || || || || |||||||| || |||| || ||| ||||| || || |||| Sbjct 31593 TGCGCGCGGCGAGGATGGCATAGTCGGGGTGTTTAGTGGTGAGAGTGGCGGCGATCTCTG 31652 Query 77442 CCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 77501 | || | || || | || | || || ||||| | || || || || || || |||| Sbjct 31653 CTGCCAGTGTGTCGAGCTCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCA 31712 Query 77502 TGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATAC 77561 | | || | | ||||| ||||| || | ||||| || || || | || || | Sbjct 31713 TCGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGGCCGTAGCACAGCTTCTGGATGC 31772 Query 77562 GAGATGTGATTTTATCAAACATGAC 77586 |||| ||||||||||| |||||||| Sbjct 31773 GAGAGGTGATTTTATCGAACATGAC 31797 >seq49 Length=318415 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || ||||| | ||||| || | || || |||||||||||||| | ||| ||| Sbjct 81305 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 81364 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||| | || || ||||| || || || ||||| ||||| || || || || || || Sbjct 81365 AGCCAATAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAGCC 81424 Query 46774 ACAAGTCTCTCTCC 46787 ||||||| ||| || Sbjct 81425 ACAAGTCGCTCCCC 81438 >seq1161 Length=118247 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || || || ||||| || || || || || || | ||||| || ||| Sbjct 51765 CTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCAATCCGCGCAGCCAGGATT 51706 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||||| || ||| |||||| || | ||||| |||| ||| || | | Sbjct 51705 GCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCTAGAGTGTCCAGT 51646 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 || | || || ||||| | || || || || || || ||||| Sbjct 51645 TCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 51602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712772225247360