Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2426 179 5e-40 seq136 141 1e-28 >seq2426 Length=102441 Score = 179 bits (198), Expect = 5e-40 Identities = 203/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 8314 GACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTC 8373 |||||| | ||||| || ||| | | ||| | |||||||| | || || ||| Sbjct 31308 GACGTTATTGCAGACGAGGCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCTACGAT 31249 Query 8374 TCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCC 8433 || ||||| |||||||||||||||||| |||||||||||||| ||| |||| | ||| Sbjct 31248 GCCTCCGAATGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGGTTTCCCATTAAGCC 31189 Query 8434 TTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACG 8493 ||||||||||| || || |||| ||| | ||| |||| || ||||||||||| || | Sbjct 31188 CTTGAGGGAGAAAGGGGCTCCCATCTCCACCATGGTCTCCCCAAAGATGGCGTTAGGCCT 31129 Query 8494 GGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC 8553 ||| || |||||||| | || | ||| ||||||||||| |||| || |||||| | | Sbjct 31128 GGGTTTCTCCACCAACAGACCCGGGTAGAGCTCCACAGCATCGATGTGTCCGTACATCTC 31069 Query 8554 CCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | ||| | ||||| || || || ||||||| Sbjct 31068 CTCGAGCACTGCAGCCATTTCTTTCTCTCCTG 31037 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || ||||| ||| || || || | | ||||| Sbjct 29179 ATGAGCCGTGTGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCAGGGTGGACCTCCTTCAGC 29120 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| ||||||| ||||||||| | |||||||| |||||||||||||| || ||||| Sbjct 29119 ACATCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCAGGG 29060 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 |||||||| || ||||| || || ||||| Sbjct 29059 ACCAGGCCGAACGCCTCGTGGCCCACAGC 29031 Score = 84.2 bits (92), Expect = 3e-11 Identities = 201/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || || || || || ||||| || || || | | | |||||||| || Sbjct 30152 CTTACCCGCCCAGCGATCTGCTTGGTAAACGACTCCACAAGGTTGCTGATGCCGTGC-TC 30094 Query 9004 A-TGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATC 9060 | | | ||| || ||||| |||| || ||| | ||| || | | | ||||| Sbjct 30093 AGTCACTATAGAGGTGTTGAAGACAAACTGTTTA--TAGCTGTAATCCTTCTCCTCAATA 30036 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | || | ||| ||||| || | |||||||| |||| |||| ||||| || || Sbjct 30035 TGGAAAGTATCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCAGATGCAATG 29976 Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179 || || ||||||||||| || | || ||||| ||||| | |||| |||| || Sbjct 29975 CGGTTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAA 29917 Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 || |||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 29916 GTGATAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 29860 >seq136 Length=251970 Score = 141 bits (156), Expect = 1e-28 Identities = 202/282 (72%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 8272 CTCCTCAT--CG-GGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 |||||||| || ||||| |||| | | | ||||||| |||| |||| || || Sbjct 84956 CTCCTCATTTCGTGGAACATGGAAGTCCACATATGGACACCACTTGGTGTTGAGGCACAC 84897 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 || || | ||| | | ||||| || ||| ||| ||||| || |||||||| Sbjct 84896 CAGTTTCTTCAAAGTGGAAGTTTTGACAATATTGAAGCCCGTCTCTCCCCCAAAGGTGCT 84837 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 ||||||||||||| | |||||||||||| ||| ||| |||||||| |||||||| || Sbjct 84836 GGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGG 84777 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 ||| |||| ||| | || |||||||| || || || | ||||| | || |||| || Sbjct 84776 AGCACCCATCTCCACCATACTCTCACCAAATATAGCATCAGGACGTGCTTTCTCCAGCAG 84717 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || |||| ||| ||||||| ||| || | ||| || || || Sbjct 84716 GACGCCGGGGTAGAGCTCCAAAGCATCTATGTCACCATAGAG 84675 Score = 109 bits (120), Expect = 8e-19 Identities = 172/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| || |||||||| || ||||| || ||| |||||| Sbjct 81134 TCACCAATGATGATGAGTCTGGTAGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGT 81075 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| ||||| || || ||||| || || || ||||| || ||||||||||| Sbjct 81074 TCTGCCTTCAGGACATCACAGACTCTGTTATGCTCTCTCAGCCATATGGTGGCGTACATG 81015 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| || || | | |||||| ||| ||||| | |||||||| | | | || Sbjct 81014 GTGAGACCCGGCAGGATGCCAAATAACTCCTGACCAATGACCAGACGCTTCTCTGGAGGG 80955 Query 9412 A---CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATT 9468 | |||| |||||| | ||||||||| |||| || || | || || ||||| Sbjct 80954 AAACCTTC---AGGATACACCATGTGCACAGGGACTTCAGATACTGTAGGAGGGTACATC 80898 Query 9469 TCACC 9473 ||||| Sbjct 80897 TCACC 80893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716713728449920