Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3478 410 1e-109 seq1157 100 3e-16 >seq3478 Length=3494213 Score = 410 bits (454), Expect = 1e-109 Identities = 1264/1946 (65%), Gaps = 27/1946 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 2084512 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 2084453 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 2084452 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 2084393 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 2084392 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 2084333 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 2084332 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 2084273 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 |||| || | | | || ||||| || ||||| | ||| | Sbjct 2084272 TCCGTTGG--CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 2084215 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || | || || || || | || || | || || || || ||||| || || || Sbjct 2084214 CTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGG 2084155 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 | ||||| || || || ||||||| | || || ||| || || |||| ||||| | Sbjct 2084154 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 2084095 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 2084094 GATAACGCATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 2084035 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 2084034 GGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 2083975 Query 53625 TGAGGTTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCA-AATT--G 53679 | | ||| ||||||||||||||| ||| || | || ||| ||| ||| || | | Sbjct 2083974 TCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAAGTCCG 2083917 Query 53680 TCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 || | || ||||||| | || | ||| |||||||| ||||| || ||||| | Sbjct 2083916 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 2083857 Query 53740 AGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 53794 | | | || |||| | || || ||||| || || || ||||||||||| || Sbjct 2083856 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 2083802 Query 53795 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCA 53854 | ||| || || || ||||| |||| || ||||| || || | ||| | ||||| || Sbjct 2083801 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 2083742 Query 53855 GTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTG 53914 ||||| |||| || || || || || | ||| | ||||||| | | | || Sbjct 2083741 GTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTC 2083682 Query 53915 TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTG 53974 ||| || | || ||| || || | | ||||||||| || ||||| | Sbjct 2083681 ACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCA 2083622 Query 53975 TCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 54034 |||| || || || || |||||||||||| ||||| ||| ||| | || ||| || Sbjct 2083621 TCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGC 2083562 Query 54035 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCG 54094 ||||| ||||| ||||| ||||| || || || || || |||| || || ||||| Sbjct 2083561 TTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCC 2083502 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| | Sbjct 2083501 TTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGG 2083442 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | | || || | |||||| || |||||||| | || | || ||||| Sbjct 2083441 TACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTG 2083382 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || ||||| ||||||||||| | | || ||||| || ||||| |||| ||| ||| Sbjct 2083381 TTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAG 2083322 Query 54275 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 || || ||| | ||| || | || | || ||||| || || ||| ||||| Sbjct 2083321 CTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATG 2083262 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | ||||| | |||| ||| || ||||| ||||| || || |||||| ||||| || Sbjct 2083261 AGGGCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGC 2083202 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || ||||| |||| || | | | ||||| ||||| || | ||| || || ||| Sbjct 2083201 AGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCG 2083142 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 || || ||||| || || || || || ||||| |||||||| ||| || |||||| Sbjct 2083141 TGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTC 2083082 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 2083081 CCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCA 2083022 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || || || |||| |||||| |||| ||| || || ||||| ||||||| || || Sbjct 2083021 TTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAA 2082962 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 54694 |||| || || || || | ||||| || || || | | ||| | || | Sbjct 2082961 TCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCAAGT 2082902 Query 54695 GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTGACATAGTTAAATA 54752 || | ||||| || |||| | || | | || | || |||| ||||| | | Sbjct 2082901 GTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTACA 2082844 Query 54753 AATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 54812 |||| ||| || || || || | || || || |||||||| | || || ||||| | Sbjct 2082843 GGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCGA 2082784 Query 54813 TTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 54872 | | || || || ||||| || || || | | || || |||||| || || || | Sbjct 2082783 TGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCCG 2082724 Query 54873 CTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 | | ||| ||||| | || || || || || || | || | || ||||| ||||||| Sbjct 2082723 CCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTCA 2082664 Query 54933 TAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATA 54991 | | || | || || | | || |||| | || || || || |||| || Sbjct 2082663 TCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGATG 2082605 Query 54992 CGAGATGTGATTTTATCAAACATGAC 55017 |||||||||||||| || |||||||| Sbjct 2082604 CGAGATGTGATTTTGTCGAACATGAC 2082579 >seq1157 Length=2784775 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||| ||||| ||||| || | ||||| || || | ||||| |||||||||||| || Sbjct 2749602 ATCTCTGTGCACAGATTGCTGGATTTGATAGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2749543 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 2749542 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2749483 Query 53879 GCTTTCCA 53886 || | ||| Sbjct 2749482 GCGTACCA 2749475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 2748469 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2748410 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || |||| || || || | || |||||| || |||| || | ||||| | Sbjct 2748409 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2748350 Query 54545 ATGTGCTGAGGTC 54557 |||||||| |||| Sbjct 2748349 ATGTGCTGGGGTC 2748337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593695216496400