Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3522 156 4e-33 seq3467 129 6e-25 seq2977 109 6e-19 >seq3522 Length=4083170 Score = 156 bits (172), Expect = 4e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||||||||| ||||| ||||||||| | || || || | Sbjct 3190305 AAACATGCAGATCTTTGTGAAAACGCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 3190364 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | | | |||| | |||| ||||| | ||||| || ||||| ||| | | Sbjct 3190365 CAGCGACACCATCGAGAACG-TGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTG 3190423 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| |||||||| || | ||||||||| |||| Sbjct 3190424 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACT 3190483 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 3190484 ACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 3190536 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| Sbjct 3190765 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 3190824 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || |||||||| ||| | ||||| Sbjct 3190825 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3190883 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 3190884 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 3190943 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 3190944 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 3190992 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| Sbjct 3190993 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 3191052 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || |||||||| ||| | ||||| Sbjct 3191053 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3191111 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 3191112 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 3191171 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 3191172 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 3191220 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| Sbjct 3191449 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 3191508 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || |||||||| ||| | ||||| Sbjct 3191509 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3191567 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 3191568 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 3191627 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || |||| | ||||| || Sbjct 3191628 CATCCAGAAGGAGTCCACCCTCCACCTTGTTCTGCGTCTCAGGGGTGG 3191675 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| || || || || |||||||| |||| || || | Sbjct 3219627 AAACATGCAGATCTTTGTGAAAACCCTAACTGGTAAGACCATCACTCTCGAGGTTGAGCC 3219686 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | |||||| ||||| | || || |||||||| ||| | || Sbjct 3219687 CAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGA 3219746 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | ||||||||| ||||| Sbjct 3219747 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 3219806 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 3219807 CAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 3219858 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | Sbjct 3190537 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 3190596 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| ||||| | ||||| || ||||| ||| | ||||| Sbjct 3190597 GACACAATTGAAAACG-TGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCA 3190655 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | ||||||||| |||||||| Sbjct 3190656 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCTGACTACAA 3190715 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 3190716 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 3190764 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | Sbjct 3191221 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 3191280 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| ||||| | ||||| || ||||| ||| | ||||| Sbjct 3191281 GACACAATTGAAAACG-TGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCA 3191339 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | ||||||||| |||||||| Sbjct 3191340 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCTGACTACAA 3191399 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 3191400 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 3191448 >seq3467 Length=3272559 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || ||||| ||||||| ||||| |||||| Sbjct 2318159 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 2318218 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 2318219 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 2318278 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 2318279 ATCAGCAGAGACGAGG 2318294 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || ||||| ||||||| ||||| |||||| Sbjct 2328791 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 2328732 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 2328731 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 2328672 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 2328671 ATCAGCAGAGACGAGG 2328656 Score = 114 bits (126), Expect = 1e-20 Identities = 104/127 (82%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| ||||||| | |||| ||| | |||||| | Sbjct 2317547 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGATGCCATGAAGGACGAAGAGCGCTAC 2317605 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct 2317606 TTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAATGAGAACCTG 2317665 Query 116804 GTCGAGC 116810 || |||| Sbjct 2317666 GT-GAGC 2317671 Score = 114 bits (126), Expect = 1e-20 Identities = 104/127 (82%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| ||||||| | |||| ||| | |||||| | Sbjct 2329403 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGATGCCATGAAGGACGAAGAGCGCTAC 2329345 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct 2329344 TTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAATGAGAACCTG 2329285 Query 116804 GTCGAGC 116810 || |||| Sbjct 2329284 GT-GAGC 2329279 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| |||||||| | ||||| ||||| |||||||| || || Sbjct 2317748 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCA 2317807 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||||||| Sbjct 2317808 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACGTAC 2317862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| |||||||| | ||||| ||||| |||||||| || || Sbjct 2329202 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCA 2329143 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||||||| Sbjct 2329142 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACGTAC 2329088 >seq2977 Length=7416971 Score = 109 bits (120), Expect = 6e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || ||||||||| | ||||| || ||||| ||||| || |||| ||| Sbjct 6484175 GAACCTCTGCTCCGAGAGAACCCCAGGCGGTTTGTCATTTTTCCCATCCAGTACCGAGAC 6484116 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| ||||||||| ||||| |||| || ||||||||||| |||||||||| Sbjct 6484115 ATCTGGAAGATGTACAAACAGGCCCAGGCCTCTTTCTGGACCGTGGAGGAGGTGG 6484061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515196304946800