Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3478 120 3e-22 seq3522 100 2e-16 >seq3478 Length=3494213 Score = 120 bits (132), Expect = 3e-22 Identities = 481/743 (65%), Gaps = 26/743 (3%) Strand=Plus/Minus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| | |||||||| || | ||| || || | | || | || ||| | | Sbjct 2084457 GGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGG 2084398 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 |||| || ||||||||||| || ||||| || || | ||||||||||| | || Sbjct 2084397 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACA 2084338 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 || || ||| || ||||| | ||| || || || || |||||||||| Sbjct 2084337 GCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCC 2084278 Query 133402 ACAGATT-GTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATA 133460 |||| | ||||| || | ||||| | | | || || | || | ||| Sbjct 2084277 ACAGGTCCGTTGG---------CGTC-TTCTC--CCACAT-GTCGT---ACTGGAGAATG 2084234 Query 133461 CCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCG 133520 ||| | |||||||| | | ||||| ||||||| ||| |||||||||| Sbjct 2084233 CCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCG 2084174 Query 133521 CAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGAACCT 133579 ||||| || |||||||||||| | || || || || ||| || || ||||| | | | Sbjct 2084173 CAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGAT-GTTGA-GCAGTT 2084116 Query 133580 G-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGT 133637 | || ||| ||| || ||| ||| || | ||| | || || || ||||| ||||| Sbjct 2084115 GAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAAGCATCAGCCAATCCCTGG 2084057 Query 133638 ATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAG 133697 | |||| || || || | || | || |||| | || || || ||| Sbjct 2084056 ACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAG 2083997 Query 133698 TGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGC 133757 | ||||| |||||| | |||||| | || | ||| || | ||| |||| | || Sbjct 2083996 TAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCCAAT 2083937 Query 133758 AAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCT 133817 | ||||| | ||| || | || |||| || |||||| || | | ||| Sbjct 2083936 TTTTTAAAGTCATAAGTCC--GCTCAGGGGT-GACGTACATGTTGAGAGCGACAGAGGCC 2083880 Query 133818 AGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTG 133877 ||||| ||||| ||| ||||| || | |||| |||||| || | |||||||||| Sbjct 2083879 AGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTG 2083820 Query 133878 CTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTAT 133937 ||||| ||||||||||||| ||| | || ||||| | ||||| ||| ||||| Sbjct 2083819 CTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAG 2083760 Query 133938 AGCATGTACGGCCCGCCGGTTTC 133960 | |||||||||| |||||||| Sbjct 2083759 ACCATGTACGGCGTCCCGGTTTC 2083737 >seq3522 Length=4083170 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 3219834 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3219775 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | |||||| ||||| || ||||||||||| || ||||| Sbjct 3219774 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTT 3219715 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || ||| ||||||| || | || || || || Sbjct 3219714 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTACCAGT 3219655 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| ||||| ||||||||| Sbjct 3219654 TAGGGTTTTCACAAAGATCTGCATG 3219630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 3190968 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3190909 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | |||||| ||||| || ||||||||||| || ||||| Sbjct 3190908 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTT 3190849 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || ||| ||||| | ||| | || ||||| || Sbjct 3190848 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 3190789 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 3190788 GAGGGTCTTCACGAAGATCTGCATG 3190764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 3191196 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3191137 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | |||||| ||||| || ||||||||||| || ||||| Sbjct 3191136 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTT 3191077 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || ||| ||||| | ||| | || ||||| || Sbjct 3191076 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 3191017 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 3191016 GAGGGTCTTCACGAAGATCTGCATG 3190992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 3191652 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3191593 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | |||||| ||||| || ||||||||||| || || || Sbjct 3191592 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTT 3191533 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || ||| ||||| | ||| | || ||||| || Sbjct 3191532 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 3191473 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 3191472 GAGGGTCTTCACGAAGATCTGCATG 3191448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433811603620060