Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2909 109 1e-18 seq3511 98.7 2e-15 seq1446 93.3 8e-14 seq92 93.3 8e-14 >seq2909 Length=8757 Score = 109 bits (120), Expect = 1e-18 Identities = 222/322 (69%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 135621 GTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTTAGGAGATGGG-CGGATGTTT 135679 ||||||| | | | | || ||||| | || || || || ||| | |||| | ||| | Sbjct 7411 GTGGAAACAGAGATCTGACCCTGTGCTACACATTGAGCTAAGGCGTTGGGGCAGATCTAC 7352 Query 135680 TTATTATAGCGCC-CTTAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGAT 135738 || | || || || ||| | | ||| || | ||| || |||| |||||| || ||| Sbjct 7351 TTGTCATTGCCCCTCTTGATGCCAACAGTCTTGG-AAAGATTGCTAGTGGTATTTGTGAT 7293 Query 135739 AATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCT 135798 ||| | ||||||| | | ||||||||||||||||| || | || | ||||| ||| Sbjct 7292 AATCTGCTGACGTGTGTGGTAAGAGCCTGGGATAC---CAGTC--GTCCTCTTCTGCCCT 7238 Query 135799 GCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACA--TATAGATACGTTAA 135856 |||||||| || ||||||| ||||||||||||| | || ||| | || | | Sbjct 7237 GCAATGAACACAGCTATGTGGCTGCATCCTATTACAGCCCAGCAGGTATCCAGAC--TGA 7180 Query 135857 AATATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAG 135916 || | | || | | ||||| ||| | | ||||| |||| |||||||| | || Sbjct 7179 AAGAGTTTGGATATGTGGAAATCCCCTGCGTTGCCAAAAAGCTAGTGTGTGGAGATGAAG 7120 Query 135917 GAAATGGTGCTATGGCAGAAGT 135938 | || ||||| ||||||||||| Sbjct 7119 GTAAAGGTGCCATGGCAGAAGT 7098 >seq3511 Length=2785928 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 51913 ATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGGAAAAAATTTAAT 51972 || |||||||| || || || |||| || || |||||||| || |||||||||||||| Sbjct 696736 ATCTCCAAAGGCATTGAGTATCTGGACACTGTGTTTTTCATCCTGAGGAAAAAATTTAAC 696677 Query 51973 CAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTAGGATGGATAGGT 52032 ||||| | || || ||||| || ||||||| | ||||| || || | ||||| || Sbjct 696676 CAGGTCACCTTCCTGCACGTCTACCATCATTGCTCCATGTTCACGCTCTGGTGGATTGGC 696617 Query 52033 ATTAAATGGTTTGCTGGAGGTCAG 52056 || || ||| | || ||||| ||| Sbjct 696616 ATCAAGTGGGTGGCAGGAGGACAG 696593 >seq1446 Length=1813966 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 51893 GAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCA 51952 |||| | |||| ||| | || ||||| || || || || |||| || || ||||||| Sbjct 709163 GAGCTCTGTGGTGGTATTTCATCTCCAAGGGCATTGAGTATCTGGACACTGTGTTTTTCA 709104 Query 51953 TACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGT 52012 | | |||||||||||||| ||||| | || || ||||| || ||||||| | |||| Sbjct 709103 TCTTGAGGAAAAAATTTAACCAGGTCACCTTCCTTCACGTCTACCATCATTGCTCCATGT 709044 Query 52013 TTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | || || | ||||| || || || ||| | || ||||| ||| Sbjct 709043 TCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 709000 >seq92 Length=4710119 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 ||||||| || | |||| |||||| || |||||||| | || | | |||| || || Sbjct 4561672 GATAGCCTCGGCTCTTTGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGACACTGT 4561731 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||||||||||| ||||| || || || || || || || || ||||| || ||||| | Sbjct 4561732 CTTTTTCATACTGAGGAAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTG 4561791 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || ||||| | || | ||||| || || |||||| || | || || || Sbjct 4561792 CACCATGTTCATCCTCTGGTGGATTGGAATCAAATGGGTTCCCGGTGGACA 4561842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923155775442200