Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3522 116 4e-21 seq1379 111 2e-19 seq1290 100 3e-16 seq3256 98.7 1e-15 seq2 98.7 1e-15 seq3155 96.9 4e-15 seq3191 95.1 1e-14 >seq3522 Length=4083170 Score = 116 bits (128), Expect = 4e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || || | ||||| || | || | ||| |||||| || || ||||| Sbjct 3219863 TATTGGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 3219804 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 |||| || || || | || || |||||||| ||||| || || || | |||||||||| Sbjct 3219803 TCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCG 3219744 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | || |||||| ||| |||||| |||| || | | ||||| || | Sbjct 3219743 GGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGC 3219684 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || || |||| |||||||| || || ||||| || || |||||||| ||||| ||| Sbjct 3219683 TCAACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTTT 3219627 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || | || || |||||||| ||||| || Sbjct 3190956 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 3190897 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||||| || | || |||||| ||| |||||| |||| | Sbjct 3190896 GATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 3190837 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | || || || | |||||||| ||||| || || ||||| || Sbjct 3190836 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 3190777 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 3190776 GAAGATCTGCAT 3190765 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || | || || |||||||| ||||| || Sbjct 3191184 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 3191125 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||||| || | || |||||| ||| |||||| |||| | Sbjct 3191124 GATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 3191065 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | || || || | |||||||| ||||| || || ||||| || Sbjct 3191064 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 3191005 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 3191004 GAAGATCTGCAT 3190993 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || || || || || | ||||| || | || | ||| |||||| || || ||||| Sbjct 3191681 TACTGCCCACCCCTGAGACGCAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 3191622 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 |||| || || || | || || |||||||| ||||| || || || | |||||||||| Sbjct 3191621 TCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCG 3191562 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | || |||||| ||| ||| || |||| || | | ||||| || | Sbjct 3191561 GGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGC 3191502 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 3191501 TCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3191449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || | || ||||||||||| || || || Sbjct 3190728 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAA 3190669 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||||| || | || ||||||||| |||||| || | | Sbjct 3190668 GATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTT 3190609 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | || || || | |||||||| ||||| || || ||||| || Sbjct 3190608 TTCAATTGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 3190549 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 3190548 GAAGATCTGCAT 3190537 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || | || ||||||||||| || || || Sbjct 3191412 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAA 3191353 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||||| || | || ||||||||| |||||| || | | Sbjct 3191352 GATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTT 3191293 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | || || || | |||||||| ||||| || || ||||| || Sbjct 3191292 TTCAATTGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 3191233 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 3191232 GAAGATCTGCAT 3191221 >seq1379 Length=720876 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||||||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 211507 AAAGATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 211448 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 211447 TCACCACTATACTAACGAGGA 211427 >seq1290 Length=2399113 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1724908 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1724967 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 1724968 TACTAACGAGGACTG 1724982 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1717953 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1718012 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1718013 TACTAACGAGGA 1718024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1719411 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1719470 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1719471 TACTAACGAGGA 1719482 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1722411 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1722470 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1722471 TACTAACGAGGA 1722482 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1723920 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1723979 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1723980 TACTAACGAGGA 1723991 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 84 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 143 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 144 TACTAACGAGGA 155 >seq3256 Length=4358345 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1764537 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1764596 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1764597 TACTAACGAGGA 1764608 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1765186 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1765245 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1765246 TACTAACGAGGA 1765257 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1765800 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1765859 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1765860 TACTAACGAGGA 1765871 >seq2 Length=10904619 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 7371076 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 7371017 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 7371016 TACTAACGAGGATT 7371003 >seq3155 Length=5024138 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4946618 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4946677 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4946678 ATACTAACGAGGA 4946690 >seq3191 Length=123143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 120422 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 120481 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 120482 TACTAACGAGGA 120493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571792189855400