Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3522 104 2e-17 >seq3522 Length=4083170 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 3190499 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3190440 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| ||| | || |||||||| || ||||| ||| | | Sbjct 3190439 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTCACGT 3190382 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || || | |||||||| ||||| ||||| ||||||| Sbjct 3190381 TCTCGATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGCGTTTTCA 3190322 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 3190321 CAAAGATCTGCAT 3190309 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 3191639 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3191580 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||||||| ||| | || |||||| || ||||| ||| | | Sbjct 3191579 ATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTC 3191520 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || |||| |||||||| ||||| ||||| || ||||| Sbjct 3191519 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACG 3191460 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3191459 AAGATCTGCAT 3191449 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 3190955 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3190896 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| |||||||||| ||| | || |||||| || || ||||| ||| | | Sbjct 3190895 ATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATC--CTGGATTTTGGCCTTGACGT 3190838 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 3190837 TCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 3190778 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 3190777 CGAAGATCTGCAT 3190765 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 3191183 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3191124 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| |||||||||| ||| | || |||||| || || ||||| ||| | | Sbjct 3191123 ATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATC--CTGGATTTTGGCCTTGACGT 3191066 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 3191065 TCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 3191006 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 3191005 CGAAGATCTGCAT 3190993 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 3219821 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3219762 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| |||||||||| ||| | || |||||| || || ||||| ||| | || Sbjct 3219761 ATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATC--CTGGATTTTGGCCTTGACAT 3219704 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || || | |||||||| || || || || ||||||| Sbjct 3219703 TCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCA 3219644 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 3219643 CAAAGATCTGCAT 3219631 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | ||||||||| || || Sbjct 3190727 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAG 3190668 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| |||||||||| ||| | || |||||||| || ||||| ||| | | Sbjct 3190667 ATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTCACGT 3190610 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 3190609 TTTCAATTGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 3190550 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 3190549 CGAAGATCTGCAT 3190537 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | ||||||||| || || Sbjct 3191411 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAG 3191352 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| |||||||||| ||| | || |||||||| || ||||| ||| | | Sbjct 3191351 ATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTCACGT 3191294 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 3191293 TTTCAATTGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 3191234 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 3191233 CGAAGATCTGCAT 3191221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323058002400800