Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq3522 109 4e-19
>seq3522
Length=4083170
Score = 109 bits (120), Expect = 4e-19
Identities = 147/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || ||| | || ||||| ||
Sbjct 3190968 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3190909
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || |||| || ||| |||||||| || | |||||||| ||| |||||
Sbjct 3190908 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTT 3190849
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||
Sbjct 3190848 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 3190789
Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||| ||||| ||||||
Sbjct 3190788 GAGGGTCTTCACGAAGATCTGCATG 3190764
Score = 109 bits (120), Expect = 4e-19
Identities = 147/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || ||| | || ||||| ||
Sbjct 3191196 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3191137
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || |||| || ||| |||||||| || | |||||||| ||| |||||
Sbjct 3191136 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTT 3191077
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||
Sbjct 3191076 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 3191017
Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||| ||||| ||||||
Sbjct 3191016 GAGGGTCTTCACGAAGATCTGCATG 3190992
Score = 104 bits (114), Expect = 2e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || ||| | || ||||| ||
Sbjct 3190512 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3190453
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || |||| || ||| ||||| || || | || ||||||||| |||||
Sbjct 3190452 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTT 3190393
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | ||| ||||| | ||| || |||||||| ||
Sbjct 3190392 GGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 3190333
Query 45313 CAGAGTCTTCACAAAGATTTGCATGTT 45339
|| || ||||||||||| ||||||||
Sbjct 3190332 GAGCGTTTTCACAAAGATCTGCATGTT 3190306
Score = 104 bits (114), Expect = 2e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || ||| | || ||||| ||
Sbjct 3191652 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3191593
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || |||| || ||| |||||||| || | |||||||| ||| || ||
Sbjct 3191592 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTT 3191533
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||
Sbjct 3191532 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 3191473
Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||| ||||| ||||||
Sbjct 3191472 GAGGGTCTTCACGAAGATCTGCATG 3191448
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || ||| | || || || ||
Sbjct 3190740 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTG 3190681
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| ||||| || |||| || ||| |||||||| || | || ||||||||| |||||
Sbjct 3190680 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATTTT 3190621
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | |||| | ||| ||||||| ||| || |||||||| ||
Sbjct 3190620 GGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 3190561
Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||| ||||| ||||||
Sbjct 3190560 GAGGGTCTTCACGAAGATCTGCATG 3190536
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || ||| | || || || ||
Sbjct 3191424 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTG 3191365
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| ||||| || |||| || ||| |||||||| || | || ||||||||| |||||
Sbjct 3191364 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATTTT 3191305
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | |||| | ||| ||||||| ||| || |||||||| ||
Sbjct 3191304 GGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 3191245
Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||| ||||| ||||||
Sbjct 3191244 GAGGGTCTTCACGAAGATCTGCATG 3191220
Score = 98.7 bits (108), Expect = 8e-16
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || ||| | || ||||| ||
Sbjct 3219834 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3219775
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || |||| || ||| |||||||| || | |||||||| ||| |||||
Sbjct 3219774 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTT 3219715
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | ||| ||||| | || || ||||| || ||
Sbjct 3219714 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTACCAGT 3219655
Query 45313 CAGAGTCTTCACAAAGATTTGCATGTT 45339
|| || ||||||||||| ||||||||
Sbjct 3219654 TAGGGTTTTCACAAAGATCTGCATGTT 3219628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395058082749655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |