Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3478 464 6e-126
seq1157 120 3e-22
seq3522 95.1 1e-14
>seq3478
Length=3494213
Score = 464 bits (514), Expect = 6e-126
Identities = 1065/1595 (67%), Gaps = 41/1595 (3%)
Strand=Plus/Minus
Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468
|| ||||||| || | | |||| ||||||| ||| || |||| || | ||||||
Sbjct 2084500 TCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAAC 2084441
Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528
|| || || | || ||||| ||| |||||| |||| | | |||| || || |||
Sbjct 2084440 TCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTG 2084381
Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588
|| ||||| ||||| ||||| || || || ||||| || | || ||| || ||| |||
Sbjct 2084380 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTC 2084321
Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648
| ||| || || | || || ||| |||| | |||||||||||| || | ||||||
Sbjct 2084320 ACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTC 2084261
Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708
|| |||||||| ||||| || | | ||| |||| |||| ||||||||||||
Sbjct 2084260 ---TTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTC 2084204
Query 22709 TCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767
|| || || | | || ||||| || ||||||||||| ||||| ||| | ||||| ||
Sbjct 2084203 TCATA-GGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACAT 2084145
Query 22768 AGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824
|||||| ||||| | | ||| || || || ||| |||||| | || |||
Sbjct 2084144 AGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGG---GGCTTTCAAAGGGATAACG 2084088
Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884
||| | | ||| || || |||| ||||| || || || || ||||| | || ||
Sbjct 2084087 CATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCAT 2084028
Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944
|||||| | || || || || || | || ||||| ||||||||||
Sbjct 2084027 GTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTT 2083968
Query 22945 TCTGGTCACAAT---TTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT-- 22999
||| ||||| ||| || | | |||||| ||| | ||| |
Sbjct 2083967 CCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAA--GTCCGCTCA 2083913
Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059
| || || |||||| |||| ||||| |||||||| || ||||||||||| |||
Sbjct 2083912 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTG 2083853
Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119
|||||||| || ||||| || || || ||||| ||||| || ||||||| ||| |
Sbjct 2083852 CTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGC 2083793
Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179
|||||||| || | ||||| | ||| ||||||| |||||||||||| || || || |
Sbjct 2083792 TGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTC 2083733
Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT---GAACACGTCGCACGTACCTG 23236
|||||||||||||| || ||| | |||||| | ||||| ||| |||
Sbjct 2083732 TGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCAC---CCTC 2083676
Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296
|| || | ||| || | ||| | | ||||| || | || | || || ||||
Sbjct 2083675 CCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGC 2083616
Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356
||||| | | ||||||||| || ||| | || || || || || ||||
Sbjct 2083615 CCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATG 2083556
Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416
|| || || || ||||| || ||||||||||| || | ||| ||| |||||| || ||
Sbjct 2083555 AAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCC 2083496
Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476
|||||||| |||| |||| ||||| ||||| || ||||| ||||| ||||| | |
Sbjct 2083495 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATG 2083436
Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536
|| || ||||| ||||| || ||||| |||||||| || ||||| || |||||||||||
Sbjct 2083435 GCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAA 2083376
Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAA 23593
|| || | ||| || ||||| |||||||| |||| ||| || | |||
Sbjct 2083375 ACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTC--- 2083319
Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653
|| | | || || | | || | || || ||||| | ||||| || || |
Sbjct 2083318 CCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGG 2083259
Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713
||||| || || || ||||||||||| |||||||||||||| || || | |||| || |
Sbjct 2083258 GCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 2083199
Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773
|| || |||| |||| || || | || ||| || |||||| ||||||
Sbjct 2083198 AAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 2083139
Query 23774 GTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829
|| || ||| ||| |||| || ||||| || |||||| | || || || |||
Sbjct 2083138 GTGAA----CCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 2083083
Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC 23889
||||| || || | || || | ||| | ||||| || || | ||| | |||
Sbjct 2083082 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 2083023
Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949
|| || || | ||| || || || | || || || || ||||| ||| ||| ||
Sbjct 2083022 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 2082963
Query 23950 GTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984
|| | || | | ||||||||| || | ||||
Sbjct 2082962 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGT 2082928
>seq1157
Length=2784775
Score = 120 bits (132), Expect = 3e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
|||| || || |||||||||| || || ||||| | ||| | ||||| || || || |
Sbjct 2749142 TTTCCACTCGCTTCATAAAAAGGTCTGGGATCCACAAGGCGAAAAACAGGTCCCGCGCCC 2749083
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
| ||| ||||| || |||||||| ||||| |||||||| || ||||| || | |||||
Sbjct 2749082 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAACTCCAAAAACTCGAACACATCAGAATGCC 2749023
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||||||||||| | || ||||| || || ||||
Sbjct 2749022 ACGGCTCGAGGTACATAGCGAACGCCCCAGGCCTCT 2748987
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||| |||||| |||||||||||| || || || || |||||||| | || || ||
Sbjct 2749630 CACCTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATAGT 2749571
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| || ||| || || |||| ||||| | ||||||||| | |||||| || ||
Sbjct 2749570 GCCCAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGT 2749511
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
|| || || ||||||||| ||||| || |||||
Sbjct 2749510 ACCAGTTTCTGTCTGCGACTCAATGATGGCGTACCACA 2749473
>seq3522
Length=4083170
Score = 95.1 bits (104), Expect = 1e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||||||||| || || || || || || || ||||| || |||||| | || ||||| |
Sbjct 3190304 CAAACATGCAGATCTTTGTGAAAACGCTCACTGGCAAGACCATCACCCTTGAGGTTGAGC 3190363
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||| |||| | || || | ||| ||||||||||||| | || || |
Sbjct 3190364 CCAGCGACACCATCGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTG 3190423
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| | || || || |||||||| ||| |||||||
Sbjct 3190424 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3190463
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| | || ||||| ||
Sbjct 3190536 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAG 3190595
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| || || | ||| ||||||||||||| | || ||||||||
Sbjct 3190596 TGACACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCA 3190655
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||| | || || || || ||||| ||| | |||||
Sbjct 3190656 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGA 3190691
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| | || ||||| ||
Sbjct 3190764 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 3190823
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| | ||| ||| ||||| ||| | || ||||||||
Sbjct 3190824 TGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3190883
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||| | || || || |||||||| ||| |||||||
Sbjct 3190884 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3190919
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| | || ||||| ||
Sbjct 3190992 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 3191051
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| | ||| ||| ||||| ||| | || ||||||||
Sbjct 3191052 TGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3191111
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||| | || || || |||||||| ||| |||||||
Sbjct 3191112 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3191147
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| | || ||||| ||
Sbjct 3191220 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAG 3191279
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| || || | ||| ||||||||||||| | || ||||||||
Sbjct 3191280 TGACACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCA 3191339
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||| | || || || || ||||| ||| | |||||
Sbjct 3191340 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGA 3191375
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| | || ||||| ||
Sbjct 3191448 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 3191507
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| | || ||| ||||| ||| | || ||||||||
Sbjct 3191508 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3191567
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||| | || || || |||||||| ||| |||||||
Sbjct 3191568 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3191603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445746591255600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |