Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3478 464 6e-126 seq1157 120 3e-22 seq3522 95.1 1e-14 >seq3478 Length=3494213 Score = 464 bits (514), Expect = 6e-126 Identities = 1065/1595 (67%), Gaps = 41/1595 (3%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 || ||||||| || | | |||| ||||||| ||| || |||| || | |||||| Sbjct 2084500 TCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAAC 2084441 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | || ||||| ||| |||||| |||| | | |||| || || ||| Sbjct 2084440 TCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTG 2084381 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || ||||| || | || ||| || ||| ||| Sbjct 2084380 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTC 2084321 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | ||| || || | || || ||| |||| | |||||||||||| || | |||||| Sbjct 2084320 ACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTC 2084261 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| || | | ||| |||| |||| |||||||||||| Sbjct 2084260 ---TTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTC 2084204 Query 22709 TCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 || || || | | || ||||| || ||||||||||| ||||| ||| | ||||| || Sbjct 2084203 TCATA-GGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACAT 2084145 Query 22768 AGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824 |||||| ||||| | | ||| || || || ||| |||||| | || ||| Sbjct 2084144 AGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGG---GGCTTTCAAAGGGATAACG 2084088 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||| | | ||| || || |||| ||||| || || || || ||||| | || || Sbjct 2084087 CATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCAT 2084028 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 |||||| | || || || || || | || ||||| |||||||||| Sbjct 2084027 GTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTT 2083968 Query 22945 TCTGGTCACAAT---TTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT-- 22999 ||| ||||| ||| || | | |||||| ||| | ||| | Sbjct 2083967 CCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAA--GTCCGCTCA 2083913 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | || || |||||| |||| ||||| |||||||| || ||||||||||| ||| Sbjct 2083912 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTG 2083853 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 |||||||| || ||||| || || || ||||| ||||| || ||||||| ||| | Sbjct 2083852 CTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGC 2083793 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||||| || | ||||| | ||| ||||||| |||||||||||| || || || | Sbjct 2083792 TGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTC 2083733 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT---GAACACGTCGCACGTACCTG 23236 |||||||||||||| || ||| | |||||| | ||||| ||| ||| Sbjct 2083732 TGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCAC---CCTC 2083676 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || || | ||| || | ||| | | ||||| || | || | || || |||| Sbjct 2083675 CCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGC 2083616 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | ||||||||| || ||| | || || || || || |||| Sbjct 2083615 CCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATG 2083556 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || || || ||||| || ||||||||||| || | ||| ||| |||||| || || Sbjct 2083555 AAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCC 2083496 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||||| |||| |||| ||||| ||||| || ||||| ||||| ||||| | | Sbjct 2083495 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATG 2083436 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || ||||| ||||| || ||||| |||||||| || ||||| || ||||||||||| Sbjct 2083435 GCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAA 2083376 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAA 23593 || || | ||| || ||||| |||||||| |||| ||| || | ||| Sbjct 2083375 ACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTC--- 2083319 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 || | | || || | | || | || || ||||| | ||||| || || | Sbjct 2083318 CCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGG 2083259 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 ||||| || || || ||||||||||| |||||||||||||| || || | |||| || | Sbjct 2083258 GCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 2083199 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || || |||| |||| || || | || ||| || |||||| |||||| Sbjct 2083198 AAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 2083139 Query 23774 GTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829 || || ||| ||| |||| || ||||| || |||||| | || || || ||| Sbjct 2083138 GTGAA----CCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 2083083 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC 23889 ||||| || || | || || | ||| | ||||| || || | ||| | ||| Sbjct 2083082 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 2083023 Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949 || || || | ||| || || || | || || || || ||||| ||| ||| || Sbjct 2083022 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 2082963 Query 23950 GTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 || | || | | ||||||||| || | |||| Sbjct 2082962 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGT 2082928 >seq1157 Length=2784775 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || |||||||||| || || ||||| | ||| | ||||| || || || | Sbjct 2749142 TTTCCACTCGCTTCATAAAAAGGTCTGGGATCCACAAGGCGAAAAACAGGTCCCGCGCCC 2749083 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| ||||| |||||||| || ||||| || | ||||| Sbjct 2749082 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAACTCCAAAAACTCGAACACATCAGAATGCC 2749023 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||||||||| | || ||||| || || |||| Sbjct 2749022 ACGGCTCGAGGTACATAGCGAACGCCCCAGGCCTCT 2748987 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| |||||||||||| || || || || |||||||| | || || || Sbjct 2749630 CACCTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATAGT 2749571 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||| || || |||| ||||| | ||||||||| | |||||| || || Sbjct 2749570 GCCCAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGT 2749511 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || || ||||||||| ||||| || ||||| Sbjct 2749510 ACCAGTTTCTGTCTGCGACTCAATGATGGCGTACCACA 2749473 >seq3522 Length=4083170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || || || || || ||||| || |||||| | || ||||| | Sbjct 3190304 CAAACATGCAGATCTTTGTGAAAACGCTCACTGGCAAGACCATCACCCTTGAGGTTGAGC 3190363 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| |||| | || || | ||| ||||||||||||| | || || | Sbjct 3190364 CCAGCGACACCATCGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTG 3190423 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| | || || || |||||||| ||| ||||||| Sbjct 3190424 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3190463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 3190536 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAG 3190595 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || | ||| ||||||||||||| | || |||||||| Sbjct 3190596 TGACACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCA 3190655 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || || || ||||| ||| | ||||| Sbjct 3190656 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGA 3190691 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 3190764 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 3190823 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | ||| ||| ||||| ||| | || |||||||| Sbjct 3190824 TGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3190883 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || || |||||||| ||| ||||||| Sbjct 3190884 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3190919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 3190992 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 3191051 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | ||| ||| ||||| ||| | || |||||||| Sbjct 3191052 TGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3191111 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || || |||||||| ||| ||||||| Sbjct 3191112 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3191147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 3191220 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAG 3191279 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || | ||| ||||||||||||| | || |||||||| Sbjct 3191280 TGACACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCA 3191339 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || || || ||||| ||| | ||||| Sbjct 3191340 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGA 3191375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 3191448 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 3191507 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||| ||||| ||| | || |||||||| Sbjct 3191508 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 3191567 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || || |||||||| ||| ||||||| Sbjct 3191568 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3191603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746591255600