Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3478 150 2e-31 seq3467 84.2 2e-11 >seq3478 Length=3494213 Score = 150 bits (166), Expect = 2e-31 Identities = 930/1478 (63%), Gaps = 15/1478 (1%) Strand=Plus/Minus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 ||||| || || | |||||||| || | | || ||| | | ||||| || || Sbjct 2084512 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 2084453 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 || | |||||| || || || | || | | || || || ||||| || || | || Sbjct 2084452 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 2084393 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 |||||||| || || | | || || | || || || || |||||||| | | || Sbjct 2084392 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 2084333 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 ||||| || |||| |||||| | || ||| || || ||||| ||||| | Sbjct 2084332 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 2084273 Query 37315 TCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCG 37374 || ||||| |||| |||||| || || || ||||| || |||||| | || || | Sbjct 2084272 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 2084213 Query 37375 TTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCA 37434 | || |||||||| | ||| || || ||||| || | ||| | |||||| Sbjct 2084212 TCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCA 2084153 Query 37435 TAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCA 37494 ||||| || || || || || || || || | | || || || ||| || || | | Sbjct 2084152 TAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 2084093 Query 37495 TAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGT 37554 || | || | || || |||||||||| ||||| || ||||| ||||| || || || Sbjct 2084092 TAACGCATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGG 2084033 Query 37555 TTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTT 37614 | | || || || | |||| ||| || || || ||||| || || | || || Sbjct 2084032 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 2083973 Query 37615 AGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAATACG-TTA 37671 | || | || | || ||| || | | ||| || | || ||||| | || | | Sbjct 2083972 AAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGCTCA 2083913 Query 37672 TTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCG 37731 | || | | | | | | ||| | ||||| || || || || || || | | Sbjct 2083912 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTG 2083853 Query 37732 TTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTT 37791 || | | | | || || || ||||| || || | | || || |||| ||| Sbjct 2083852 CTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGC 2083793 Query 37792 TGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATT 37851 || ||| || | || || | |||||| || | || |||||||| || |||| | Sbjct 2083792 TGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTC 2083733 Query 37852 TGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA-TCGCTTTAAtttttt 37909 || | |||||| || | | |||| | || || || || || | ||| || | | Sbjct 2083732 TGCGACTCGATGATTGCATACCAT-AGCTGCTGAGCCTTCACCACACGC-TTCACCCTCC 2083675 Query 37910 tCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT--AA 37967 || | || ||| | || | || | ||| || | |||||| || | ||| | Sbjct 2083674 CCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCA-GCA-CTCATCCAG 2083617 Query 37968 TCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCAT 38027 || || || ||| |||||||| || ||||| ||||| | || || || || | ||| Sbjct 2083616 CCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCAT 2083557 Query 38028 AAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 || | ||||| | ||| | || ||| || | || ||| || | || || || | Sbjct 2083556 GAAGAGGTCAGGGATCCACAGGGC-GTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTC 2083498 Query 38087 CTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145 | ||| ||||| |||| || || || || | ||| |||||| || || | || Sbjct 2083497 CCGTGTTC-TTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTAC 2083439 Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205 || | | || || |||||||| | || ||||||| || ||| | ||||||| || Sbjct 2083438 ATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTG 2083379 Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265 || | || ||||| || || | || || || |||||| | |||| || || | Sbjct 2083378 TAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTC 2083319 Query 38266 CCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325 ||| | | || || || | | || || || || || || ||| || || | Sbjct 2083318 CCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGG 2083259 Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385 ||||| || |||| ||| || | || || || || ||||||||||| || | || | Sbjct 2083258 GCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 2083199 Query 38386 AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 || || || |||| || ||| ||||| || || || | || || || || || Sbjct 2083198 AAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 2083139 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 ||||||| || || |||| || || || || || || | || ||||| ||| Sbjct 2083138 GTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCG 2083079 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 || || || | || |||||||| ||||| || || || Sbjct 2083078 TGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 2083041 >seq3467 Length=3272559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 2318292 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 2318233 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || ||||| || ||||| || ||||||||||| ||||| || Sbjct 2318232 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCC 2318173 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 2318172 ACCACGCGCTCTCC 2318159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 2328658 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 2328717 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || ||||| || ||||| || ||||||||||| ||||| || Sbjct 2328718 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCC 2328777 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 2328778 ACCACGCGCTCTCC 2328791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468503979929200