Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3478 450 2e-121 seq3467 105 1e-17 seq1157 96.9 5e-15 >seq3478 Length=3494213 Score = 450 bits (498), Expect = 2e-121 Identities = 1279/1947 (66%), Gaps = 29/1947 (1%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 2084512 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 2084453 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 2084452 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 2084393 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || | || || Sbjct 2084392 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 2084333 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAG-AGATTCCCAATCCCAAAG 79235 | || || || | || | | ||| || || || || || |||| | ||||| || Sbjct 2084332 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCC-AGTCCCACAG 2084274 Query 79236 ATCAGACGG-GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATC 79294 || | || | | | | ||| | || || || ||||| || ||||| | || | Sbjct 2084273 GTCCGTTGGCGTCTTC-TCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 2084215 Query 79295 CTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 || ||| || ||||| | || || |||| | || || ||||| || || || Sbjct 2084214 CTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGG 2084155 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 | ||||| || || || || |||| | ||||| ||| || || |||| ||||| | Sbjct 2084154 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 2084095 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 2084094 GATAACGCATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 2084035 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 2084034 GGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 2083975 Query 79535 TGAGATTCCTGACTATTACTTTGACCAC--ATCCTTTAGTTTGAGAAAATCAAAT---CG 79589 | | |||||||| ||||||||| ||| || | | ||| ||| ||| | || Sbjct 2083974 TCAAGTTCCTGACAATTACTTTGGTCACGGATGCC--AATTTTTTAAAGTCATAAGTCCG 2083917 Query 79590 TCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATT 79649 || | || ||||||| | |||||||| |||||||| ||||| || ||||| | Sbjct 2083916 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 2083857 Query 79650 AGCATCCGCATATTGTATT-----ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCT 79704 | | | || |||| | ||||| ||||||||||| || ||||| ||||| || Sbjct 2083856 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 2083802 Query 79705 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCA 79764 | ||| || || || ||||| |||| || ||||| || || | ||| |||| || || Sbjct 2083801 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 2083742 Query 79765 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTT 79823 ||||| |||| || || || || || | ||| | | || ||||||| | | | ||| Sbjct 2083741 GTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACACGCTT 2083683 Query 79824 GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883 ||| || | || ||| || || | | ||| ||||| || ||||| || Sbjct 2083682 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 2083623 Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943 || | || || || ||| | |||||||||| ||||| ||| | | | || || || Sbjct 2083622 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCG 2083563 Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 ||||| ||||| ||||| ||||| || || || || || |||| || |||||||| Sbjct 2083562 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTC 2083503 Query 80004 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 80063 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| Sbjct 2083502 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAG 2083443 Query 80064 GTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 80123 ||| ||||| | | || |||| |||||| || |||||||| | || | || ||||| Sbjct 2083442 GTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTT 2083383 Query 80124 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 80183 || ||||| ||||||||||| | | || ||||| || ||||| |||| ||| || Sbjct 2083382 GTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTA 2083323 Query 80184 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 80243 ||| || ||| | ||| || | || | || || || || || ||| ||||| Sbjct 2083322 GCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGAT 2083263 Query 80244 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 | ||||| | |||| ||| || ||||| ||||| ||||| ||||| ||||| || Sbjct 2083262 GAGGGCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAG 2083203 Query 80304 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 || || ||||| |||| || | | | ||||| ||||| || | ||| || || || Sbjct 2083202 CAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGC 2083143 Query 80364 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 80423 ||| || ||||| || || ||||| || ||||| ||||| || ||| ||| |||||| Sbjct 2083142 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 2083083 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 2083082 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 2083023 Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543 ||| || || | || ||| || |||| ||| || || ||||| ||||||| || || Sbjct 2083022 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 2082963 Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 80603 |||| || || || || ||||||| || || || | | ||| | || | Sbjct 2082962 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCAAG 2082903 Query 80604 GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGTTGAAT 80661 ||| | ||||| || |||| | || | | || | || || | |||||| | Sbjct 2082902 TGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTAC 2082845 Query 80662 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 80721 | |||||||| || || || || | || || || || ||||| | || || ||||| Sbjct 2082844 AGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCG 2082785 Query 80722 ATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 80781 || | || || | ||||| || || || | | || || |||||| || || || Sbjct 2082784 ATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCC 2082725 Query 80782 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 80841 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 2082724 GCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTC 2082665 Query 80842 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 80900 || | || | || || | | || |||| | || || || || |||| || Sbjct 2082664 ATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGAT 2082606 Query 80901 ACGAGACGTGATTTTATCAAACATGAC 80927 ||||| |||||||| || |||||||| Sbjct 2082605 GCGAGATGTGATTTTGTCGAACATGAC 2082579 >seq3467 Length=3272559 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 2318294 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 2318235 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || |||||||||| Sbjct 2318234 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 2318175 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 2318174 CCACCACGCGCTCTCC 2318159 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 2328656 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 2328715 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || |||||||||| Sbjct 2328716 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 2328775 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 2328776 CCACCACGCGCTCTCC 2328791 >seq1157 Length=2784775 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 || || | ||| ||||||||||| || || | | || || |||||||| ||||| | Sbjct 2750176 GAGCCGGGGTAGGTTTCATAAGGGCCAAGCTCTGCTGCCAACTCACAACTGGCCTCCAGG 2750117 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || |||| || ||||| || || |||| | ||||| || || ||| |||| ||| Sbjct 2750116 GCAGCGTAGTACATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCA 2750057 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 || ||||| | ||| ||||| || || || | || || |||||||| || || || Sbjct 2750056 AACGGATAGCGCATGAGGATAAAAGCATCAGCCAGACCCTGCACACCAATTCCAATTGGC 2749997 Query 79471 CTATGTCTCTTATTAGAAATTTCAGC 79496 || || | ||| ||||| ||||||| Sbjct 2749996 CTGTGACGCTTGTTAGACCTTTCAGC 2749971 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | |||||||||||||| || ||||| || || ||||| | ||| Sbjct 2748469 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2748410 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||||||| |||| || || || | || |||||| || || | || | ||||| | Sbjct 2748409 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2748350 Query 80455 ATGTGCTGAGGTC 80467 |||||||| |||| Sbjct 2748349 ATGTGCTGGGGTC 2748337 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| ||| || || || ||||| || || ||||| || || | || || | | Sbjct 2746709 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCAGGA 2746650 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||| ||||| |||| || || |||||| || | || |||||||||||||| | Sbjct 2746649 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 2746590 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || |||||| | || | || ||||| |||||||| Sbjct 2746589 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 2746544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718236881930200