Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3478 412 5e-110 seq1157 96.9 5e-15 seq3467 86.0 8e-12 >seq3478 Length=3494213 Score = 412 bits (456), Expect = 5e-110 Identities = 1070/1615 (66%), Gaps = 21/1615 (1%) Strand=Plus/Minus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || ||||| || || || ||||||| || || || || |||| | | Sbjct 2084184 CGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGT 2084125 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| ||| || || ||||| ||||| |||||| | || || || || || || | Sbjct 2084124 TGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAAGCATCAGCCA 2084065 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 |||| || || || || || || || ||||| | | | || || | |||||| | Sbjct 2084064 ATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCA 2084005 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC-- 71645 || || || || || || |||| || || | || ||||| ||||||||| ||| Sbjct 2084004 CCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG 2083945 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAAC 71702 || | | ||| ||| ||| | ||| || | || ||| ||| | || || Sbjct 2083944 ATGCC--AATTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGAC 2083887 Query 71703 AGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTG 71760 ||| |||||||| ||||| || ||||| | | || | || | | ||||| ||| Sbjct 2083886 AGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTG--TACTCGACGATTTCCGTG 2083829 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || || || || ||||||||||| || | ||| || || || ||||| |||| || ||| Sbjct 2083828 CAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCA 2083769 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 || || || | || |||| || || ||||| |||| || || || || || | ||| Sbjct 2083768 TCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAT 2083709 Query 71881 A-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAA 71939 | | || ||||||| | | | ||| ||| || | || ||| || || | Sbjct 2083708 AGCTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAG 2083650 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCA 71998 | ||| ||||| || ||||| ||| | || | || || || || ||||||||||| Sbjct 2083649 TTCTTCAAACTCCTCCCCCCA-GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCA 2083591 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 ||||| ||| | | | | || || ||||| ||||| ||||| ||||| || || Sbjct 2083590 GGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGT 2083531 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 || || || |||| || |||||||| ||||| || ||||| || || || ||||| Sbjct 2083530 AGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 2083471 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | | ||| | ||||| || |||| ||| ||||| | | || || | |||||| | Sbjct 2083470 CAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGC 2083411 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | |||||||| | || | || ||||| || ||||| ||||||||||| | | || | Sbjct 2083410 CCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGT 2083351 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATA 72298 |||| || ||||| |||| ||| ||||| || ||| | ||| ||| | || | Sbjct 2083350 TGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCA 2083291 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || || || || ||| ||||| | ||||| | |||| ||| || ||||| | Sbjct 2083290 CGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTTAGCGTGTCGTAGATCC 2083231 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || || |||||| ||||| || || || ||||| |||| || | | | | Sbjct 2083230 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGG 2083171 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| ||||| || | ||| || || ||||| || ||||| || || ||||| || |||| Sbjct 2083170 TTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGT 2083111 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 | ||||| || ||| ||| |||||| || ||||| || || || | ||| | || Sbjct 2083110 AGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCA 2083051 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | ||| | | ||| ||| || || | || |||||| |||| || Sbjct 2083050 TGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAG 2082991 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| ||||||| || || |||| || || || || |||| || || Sbjct 2082990 TCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGC 2082931 Query 72659 TATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCC 72718 || || | | ||| || || | ||| | ||||| || |||| | || | Sbjct 2082930 GGTCTTTGTTTGCAAGAACAATGTCAAGTGTGTCTTTCGAAATCAT-GGAGGA-GTGGCG 2082873 Query 72719 CATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 72776 | || | || || | |||||| | | |||||||| || || || || | || || Sbjct 2082872 TTTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTT 2082813 Query 72777 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || ||||| | || || ||||| || | || || || ||||| || || || | Sbjct 2082812 CGTCTCTTTGTGCAAGTTAGAGACGGCGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTA 2082753 Query 72837 TTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 72896 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 2082752 CTTGGTTGTGAGAGTGGCAGCGATCTCCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGAC 2082693 Query 72897 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 72956 || | || | || ||||| |||||||| | || | || || | | || | Sbjct 2082692 GCCGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCAT 2082633 Query 72957 GTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 ||| | || || || || |||| || ||||| |||||||| || ||||| || Sbjct 2082632 GTTGAGTCCGTAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 2082579 >seq1157 Length=2784775 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || || || ||||| || || ||||| || || | || || || | Sbjct 2746709 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCAGGA 2746650 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| ||||| |||| || || |||||| || | ||||||||||||||||| | Sbjct 2746649 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 2746590 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 2746589 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 2746544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 || || ||||| ||||| || | ||||| || || | ||||| |||||||||||| || Sbjct 2749602 ATCTCTGTGCACAGATTGCTGGATTTGATAGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2749543 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 || || |||||||| |||| || | || ||||||||||| |||| || || || || Sbjct 2749542 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2749483 Query 71872 GCTTTCCA 71879 || | ||| Sbjct 2749482 GCGTACCA 2749475 >seq3467 Length=3272559 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 2317861 TACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 2317802 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| | |||||| || ||||| ||||| Sbjct 2317801 CCGTAGAAACACCGGGCCTCCGTTACCTGCACTTC 2317767 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 2329089 TACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 2329148 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| | |||||| || ||||| ||||| Sbjct 2329149 CCGTAGAAACACCGGGCCTCCGTTACCTGCACTTC 2329183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109376251800