Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3522 149 1e-30 seq3467 104 5e-17 seq2909 104 5e-17 seq2977 86.0 1e-11 >seq3522 Length=4083170 Score = 149 bits (164), Expect = 1e-30 Identities = 177/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 104326 ATTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 ||||||| || || || || | || || || || | || || || ||||| || || Sbjct 3219866 ATTTATTGGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTG 3219807 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| || || | || ||||| || || || |||||||| || |||||||| || Sbjct 3219806 TAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG 3219747 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || || || || || |||||||| || || || || ||||| || | ||| || || Sbjct 3219746 TCGGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTG 3219687 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || ||||| || || || ||||||||||| || ||||| ||||| |||||||| || Sbjct 3219686 GGCTCAACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTT 3219628 >seq3467 Length=3272559 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 2318171 GTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGG 2318230 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 2318231 CTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 2318290 Query 269258 GA 269259 || Sbjct 2318291 GA 2318292 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 2328779 GTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGG 2328720 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 2328719 CTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 2328660 Query 269258 GA 269259 || Sbjct 2328659 GA 2328658 >seq2909 Length=8757 Score = 104 bits (114), Expect = 5e-17 Identities = 227/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 165102 AGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTAAGAA 165161 ||||||||||| | ||||| | | | || ||||| |||| || |||||||| Sbjct 7427 AGGATGAATGGGAGCTGTGGAAACAGAGATCTGACCCTGTGCTACACATTGAGCTAAGGC 7368 Query 165162 GATGGG-CAGATATGATGTTGATAGCACC-CTTAACAGCAAACAGTTTAGCGAAGATAGC 165219 | |||| ||||| | | | || || || ||| | || |||||| | | ||||| || Sbjct 7367 GTTGGGGCAGATCTACTTGTCATTGCCCCTCTTGAT-GCCAACAGTCTTGGAAAGATTGC 7309 Query 165220 TAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAATAAACC 165279 || ||||| ||| |||| || | |||||| | || ||||| ||| ||| | | || Sbjct 7308 TAGTGGTATTTGTGATAATCTGCTGACGTGTGTGGTAAGAGCCTGGGATACCAGTCGTCC 7249 Query 165280 TTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAGCAGCA 165339 | | |||| || || ||||| ||| ||||||| ||||||||||| | ||||| Sbjct 7248 TCT-----TCTGCCCTGCAATGAACACAGCTATGTGGCTGCATCCTATTACAGCCCAGCA 7194 Query 165340 TATAGAAACTCTTAAGCATATGGGGTACATAGAAGTTGAGTGTATTGAGAAAAAGCTAGC 165399 || | || || | | || || | ||| | || ||| |||||||||| Sbjct 7193 GGTATCCAGACTGAAAGAGTTTGGATATGTGGAAATCCCCTGCGTTGCCAAAAAGCTAGT 7134 Query 165400 TTGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435 ||||| ||| || |||||||||||||||||||| Sbjct 7133 GTGTGGAGATGAAGGTAAAGGTGCCATGGCAGAAGT 7098 >seq2977 Length=7416971 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||| ||||| || ||||| || || || ||||| ||||||| ||| Sbjct 6481978 GTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCTGCTATCTACTGG 6481919 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || || | ||||| || | | | ||| ||||| | || ||||||||| Sbjct 6481918 CTGAAGAAGAGGGGGTTAATGCCTGGCCTTAGCTACTCCAACGAGCTCATTAGCAGGGAC 6481859 Query 269258 GA 269259 || Sbjct 6481858 GA 6481857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151345955601940