Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq3144 147 3e-30 seq3111 118 2e-21 seq2933 109 8e-19 >seq3144 Length=4646089 Score = 147 bits (162), Expect = 3e-30 Identities = 132/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 9605 TTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTG 9664 |||| | ||||| | |||||| || | |||||| || ||| ||||||| ||| | || Sbjct 4036175 TTGTCTTACCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTATG 4036116 Query 9665 GATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGT 9724 | || | |||||| ||||||||||| | ||||||||| | ||||||||| || |||| Sbjct 4036115 GGTGGACCTCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCAGATGGTGGCGT 4036056 Query 9725 ACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||||| |||||||| ||||||||||| ||||| || |||||||| Sbjct 4036055 ACATCATCAGACCAGGGACCAGGCCAAATGCCTCGTGGCCGACAGC 4036010 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| |||||||||||||| || |||| ||||| Sbjct 4037834 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATTAGGCCC 4037775 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || |||||||||| ||| | || | || || |||||| |||| | | | Sbjct 4037774 TTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAGATGCCGTTATGTCTG 4037715 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 ||||| ||||||| | || | ||| | ||||||||| |||| || ||||| || || Sbjct 4037714 GGCTTCTCCACCAGCAGGCCCGGGTAGAGCTCCACAGCATCGACGTGCCCGTACAGCTCC 4037655 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||||| ||||| || || |||| Sbjct 4037654 TCCAGCACCGCAGCCATTTCTTTCTCCCCTG 4037624 Score = 84.2 bits (92), Expect = 3e-11 Identities = 180/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 9324 TACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTG---GGT 9380 ||| || || || || || || |||||||| || || || | | | |||||||| ||| Sbjct 4036797 TACCCGTCCGGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCGGT 4036738 Query 9381 CATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTC 9440 || || || ||||| | || || | ||||| ||| | ||| | ||||| | Sbjct 4036737 CACGACAGAGG---TGTTGAAGACAAACTGCTTGTAGCTATAATCTGTCTCCTCAATGTG 4036681 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 || ||| ||||| |||| |||||||| || | |||| ||||| || || || Sbjct 4036680 GAAACTATCGGGCATCAGAGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGATGCAATGCG 4036621 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 || ||||||||||| || | ||||||||| ||||| | |||| | | |||| Sbjct 4036620 GTTCTGGTACTGGAAGCGCTG-GTTAAAGAGCAGCTCGGGGTCAAACTTGAGTTTGAAGT 4036562 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | |||||||| || ||||| || || Sbjct 4036561 GATAGCCGCTCAGATGCTGCACGTA 4036537 >seq3111 Length=5441797 Score = 118 bits (130), Expect = 2e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| |||| |||| ||| || || | | ||| || |||||||||| | Sbjct 3349156 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCCGTCTTGACGATATTA 3349097 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || ||||| || ||||||||||| |||||||| | || |||||||| ||| Sbjct 3349096 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 3349037 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||||| || ||||| ||||| |||| ||| | |||||||| || || ||| Sbjct 3349036 CCAAGCAGGCCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 3348977 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || || |||||| || || | || | || | ||| ||||||| || || ||||| Sbjct 3348976 GCATTAGGACGGATTTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCA 3348917 Query 8933 CCGTAAAG 8940 || || || Sbjct 3348916 CCATAGAG 3348909 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || ||||||||||||| | ||||| || || || || ||| ||| |||||| Sbjct 3344362 TCACCAATAATGATGAGTCTGGCTGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGT 3344303 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| || || | || || |||||||| ||||||| ||||| || || || ||||| Sbjct 3344302 TCTGCCTTTAGGATGTCACAGACTCTGTTATGTTCCCGCAGCCATATGGTGGCATACATG 3344243 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 | ||||| |||| | |||||| |||| ||||||| ||||||||| | | | | || Sbjct 3344242 GTTAGACCCGGCAGAATGCCAAATACCTCCTGACCGATGGCCAGACGCTTGTCTGCTGGG 3344183 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATC 9824 | | |||||| | ||||||||| |||| || Sbjct 3344182 ATGTTTTCAGGATACACCATGTGCACTGGGACCTC 3344148 >seq2933 Length=7034445 Score = 109 bits (120), Expect = 8e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | ||| || ||||||||||| |||||||| |||| ||||| || || Sbjct 2763495 CAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGT 2763436 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| ||||| || || || |||| ||| | ||||| || || || | Sbjct 2763435 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATA 2763376 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | || |||| ||| || |||| ||| || |||| || || |||| Sbjct 2763375 TGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGTGCGTCAATGT 2763316 Query 8931 CTCCGTAAAG 8940 | |||| || Sbjct 2763315 CATCGTAGAG 2763306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708493314929200