Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq3144 147 3e-30
seq3111 118 2e-21
seq2933 109 8e-19
>seq3144
Length=4646089
Score = 147 bits (162), Expect = 3e-30
Identities = 132/166 (80%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 9605 TTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTG 9664
|||| | ||||| | |||||| || | |||||| || ||| ||||||| ||| | ||
Sbjct 4036175 TTGTCTTACCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTATG 4036116
Query 9665 GATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGT 9724
| || | |||||| ||||||||||| | ||||||||| | ||||||||| || ||||
Sbjct 4036115 GGTGGACCTCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCAGATGGTGGCGT 4036056
Query 9725 ACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770
||||||| |||||||| ||||||||||| ||||| || ||||||||
Sbjct 4036055 ACATCATCAGACCAGGGACCAGGCCAAATGCCTCGTGGCCGACAGC 4036010
Score = 141 bits (156), Expect = 1e-28
Identities = 158/211 (75%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824
|| |||||||||||||| |||||||| |||||||||||||| || |||| |||||
Sbjct 4037834 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATTAGGCCC 4037775
Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884
|||||||| || |||||||||| ||| | || | || || |||||| |||| | | |
Sbjct 4037774 TTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAGATGCCGTTATGTCTG 4037715
Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944
||||| ||||||| | || | ||| | ||||||||| |||| || ||||| || ||
Sbjct 4037714 GGCTTCTCCACCAGCAGGCCCGGGTAGAGCTCCACAGCATCGACGTGCCCGTACAGCTCC 4037655
Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| | ||||| ||||| || || ||||
Sbjct 4037654 TCCAGCACCGCAGCCATTTCTTTCTCCCCTG 4037624
Score = 84.2 bits (92), Expect = 3e-11
Identities = 180/265 (68%), Gaps = 8/265 (3%)
Strand=Plus/Minus
Query 9324 TACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTG---GGT 9380
||| || || || || || || |||||||| || || || | | | |||||||| |||
Sbjct 4036797 TACCCGTCCGGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCGGT 4036738
Query 9381 CATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTC 9440
|| || || ||||| | || || | ||||| ||| | ||| | ||||| |
Sbjct 4036737 CACGACAGAGG---TGTTGAAGACAAACTGCTTGTAGCTATAATCTGTCTCCTCAATGTG 4036681
Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500
|| ||| ||||| |||| |||||||| || | |||| ||||| || || ||
Sbjct 4036680 GAAACTATCGGGCATCAGAGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGATGCAATGCG 4036621
Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559
|| ||||||||||| || | ||||||||| ||||| | |||| | | ||||
Sbjct 4036620 GTTCTGGTACTGGAAGCGCTG-GTTAAAGAGCAGCTCGGGGTCAAACTTGAGTTTGAAGT 4036562
Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584
| |||||||| || ||||| || ||
Sbjct 4036561 GATAGCCGCTCAGATGCTGCACGTA 4036537
>seq3111
Length=5441797
Score = 118 bits (130), Expect = 2e-21
Identities = 175/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752
||||||| |||| |||| ||| || || | | ||| || |||||||||| |
Sbjct 3349156 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCCGTCTTGACGATATTA 3349097
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| || ||||| || ||||||||||| |||||||| | || |||||||| |||
Sbjct 3349096 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 3349037
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | |||||||| || ||||| ||||| |||| ||| | |||||||| || || |||
Sbjct 3349036 CCAAGCAGGCCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 3348977
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
|| || |||||| || || | || | || | ||| ||||||| || || |||||
Sbjct 3348976 GCATTAGGACGGATTTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCA 3348917
Query 8933 CCGTAAAG 8940
|| || ||
Sbjct 3348916 CCATAGAG 3348909
Score = 109 bits (120), Expect = 8e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| || ||||||||||||| | ||||| || || || || ||| ||| ||||||
Sbjct 3344362 TCACCAATAATGATGAGTCTGGCTGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGT 3344303
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
||| || || | || || |||||||| ||||||| ||||| || || || |||||
Sbjct 3344302 TCTGCCTTTAGGATGTCACAGACTCTGTTATGTTCCCGCAGCCATATGGTGGCATACATG 3344243
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
| ||||| |||| | |||||| |||| ||||||| ||||||||| | | | | ||
Sbjct 3344242 GTTAGACCCGGCAGAATGCCAAATACCTCCTGACCGATGGCCAGACGCTTGTCTGCTGGG 3344183
Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATC 9824
| | |||||| | ||||||||| |||| ||
Sbjct 3344182 ATGTTTTCAGGATACACCATGTGCACTGGGACCTC 3344148
>seq2933
Length=7034445
Score = 109 bits (120), Expect = 8e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810
|||| ||||| | ||| || ||||||||||| |||||||| |||| ||||| || ||
Sbjct 2763495 CAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGT 2763436
Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870
| ||| ||||||||| ||||| || || || |||| ||| | ||||| || || || |
Sbjct 2763435 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATA 2763376
Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930
|||| | || | || |||| ||| || |||| ||| || |||| || || ||||
Sbjct 2763375 TGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGTGCGTCAATGT 2763316
Query 8931 CTCCGTAAAG 8940
| |||| ||
Sbjct 2763315 CATCGTAGAG 2763306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708493314929200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |