Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq3522 113 4e-20
>seq3522
Length=4083170
Score = 113 bits (124), Expect = 4e-20
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | || ||||| || || ||||| ||||| ||
Sbjct 3190464 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTT 3190405
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||||| ||||| ||| ||| ||||| | | || || |||| |||||
Sbjct 3190404 GTCCTGGATTTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACCTCAAGGGTGAT 3190345
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
||| || ||||| || ||||||||||||||||||||| ||
Sbjct 3190344 GGTCTTGCCAGTGAGCGTTTTCACAAAGATCTGCATGTTT 3190305
Score = 100 bits (110), Expect = 3e-16
Identities = 119/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || ||||| || ||| ||||||| | || ||||| || || ||||| ||||| ||
Sbjct 3190692 ATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTT 3190633
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970
||| | ||||| ||||| ||| | | |||||| | ||| || || || | ||||
Sbjct 3190632 GTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCA-CTTGGCTCAACCTCCAGGGTGA 3190574
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|||| || ||||| || || ||||| |||||||||||||
Sbjct 3190573 TGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 3190535
Score = 100 bits (110), Expect = 3e-16
Identities = 119/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || ||||| || ||| ||||||| | || ||||| || || ||||| ||||| ||
Sbjct 3191376 ATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTT 3191317
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970
||| | ||||| ||||| ||| | | |||||| | ||| || || || | ||||
Sbjct 3191316 GTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCA-CTTGGCTCAACCTCCAGGGTGA 3191258
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|||| || ||||| || || ||||| |||||||||||||
Sbjct 3191257 TGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 3191219
Score = 100 bits (110), Expect = 3e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | || ||||| || || ||||| || || ||
Sbjct 3219786 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTT 3219727
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | ||||| |||||||| | | |||||| | | || || || | |||||
Sbjct 3219726 ATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGAT 3219667
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
||| || ||||| || ||||||||||||||||||||| ||
Sbjct 3219666 GGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTTT 3219627
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | || ||||| || || ||||| || || ||
Sbjct 3190920 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTT 3190861
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | ||||| ||||||||| | | |||||| | | || || || | |||||
Sbjct 3190860 ATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 3190801
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||| || ||||| || || ||||| |||||||||||||
Sbjct 3190800 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 3190763
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | || ||||| || || ||||| || || ||
Sbjct 3191148 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTT 3191089
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | ||||| ||||||||| | | |||||| | | || || || | |||||
Sbjct 3191088 ATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 3191029
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||| || ||||| || || ||||| |||||||||||||
Sbjct 3191028 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 3190991
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | || ||||| || || ||||| || || ||
Sbjct 3191604 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTT 3191545
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||||||| | | |||||| | | || || || | |||||
Sbjct 3191544 ATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 3191485
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||| || ||||| || || ||||| |||||||||||||
Sbjct 3191484 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 3191447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448271279059800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |