Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3478 417 1e-111 seq1157 105 8e-18 >seq3478 Length=3494213 Score = 417 bits (462), Expect = 1e-111 Identities = 1267/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Minus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 2084512 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 2084453 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 2084452 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 2084393 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 2084392 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 2084333 Query 62454 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62513 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 2084332 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 2084273 Query 62514 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 62571 |||| || | | | || ||||| || ||||| | ||| | Sbjct 2084272 TCCGTTGG--CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 2084215 Query 62572 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 62631 || | || || || || | || || | || || || || ||||| || || || Sbjct 2084214 CTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGG 2084155 Query 62632 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 62691 | ||||| || || || ||||||| | || || ||| || || |||| ||||| | Sbjct 2084154 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 2084095 Query 62692 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62751 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 2084094 GATAACGCATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 2084035 Query 62752 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62811 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 2084034 GGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 2083975 Query 62812 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT---CG 62866 | | || ||||||||||||||| ||| || | || ||| ||| ||| | || Sbjct 2083974 TCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAAGTCCG 2083917 Query 62867 CCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62926 | || | || ||||||| | || ||||| |||||||| ||||| || ||||| | Sbjct 2083916 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 2083857 Query 62927 AGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 62981 | | | || |||| | || || ||||| || || || |||||||| || || Sbjct 2083856 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 2083802 Query 62982 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63041 | ||| || || || ||||| |||| || ||||| || || | ||| | || || || Sbjct 2083801 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 2083742 Query 63042 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT 63100 ||||| |||| || || || || || | ||| | | || ||||||| | | | || Sbjct 2083741 GTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACACGCTT 2083683 Query 63101 GTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63160 |||| || | || ||| || || | | ||| ||||| || ||||| | Sbjct 2083682 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 2083623 Query 63161 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63220 |||| || || || || |||||||||||| ||||| ||| ||| | || ||| || Sbjct 2083622 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCG 2083563 Query 63221 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 ||||| ||||| ||||| ||||| || || || || || |||| || || ||||| Sbjct 2083562 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTC 2083503 Query 63281 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63340 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| Sbjct 2083502 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAG 2083443 Query 63341 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63400 ||| ||||| | | || || | |||||| || |||||||| | || | || ||||| Sbjct 2083442 GTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTT 2083383 Query 63401 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63460 || ||||| ||||||||||| | | ||||| || || ||||| |||| ||| || Sbjct 2083382 GTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTA 2083323 Query 63461 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63520 ||| || ||| | ||| || | || | || || || || || ||| ||||| Sbjct 2083322 GCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGAT 2083263 Query 63521 TAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580 | ||||| | |||| |||||| ||||| ||||| ||||| ||||| ||||| || Sbjct 2083262 GAGGGCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAG 2083203 Query 63581 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640 || || ||||| |||| || | | | ||||| ||||| || | ||| || || || Sbjct 2083202 CAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGC 2083143 Query 63641 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63700 ||| || ||||| || || || || || ||||| ||||| || ||| || |||||| Sbjct 2083142 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 2083083 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 2083082 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 2083023 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63820 || || || | || |||||| |||| ||| || || ||||| ||||||| || || Sbjct 2083022 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 2082963 Query 63821 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCAT 63880 |||| || || || || ||||||| || || || | | ||| || || | Sbjct 2082962 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCAAG 2082903 Query 63881 GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGTTGAAT 63938 ||| | ||||| || |||| | || | | || | || || | |||||| | Sbjct 2082902 TGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTAC 2082845 Query 63939 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 63998 | |||||||| || || || || | || || || || ||||| | || || ||||| Sbjct 2082844 AGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCG 2082785 Query 63999 ATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 64058 || | || || || ||||| || || || | | || || |||||| || || || Sbjct 2082784 ATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCC 2082725 Query 64059 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTC 64118 || ||||| ||||| | || || || || || || | || | || || || |||||| Sbjct 2082724 GCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTC 2082665 Query 64119 ATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCT-AAT 64177 || | || | || || | | ||| |||| | || || || || |||| || Sbjct 2082664 ATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGAT 2082606 Query 64178 ACGAGACGTGATTTTATCAAACATGAC 64204 ||||| |||||||| || |||||||| Sbjct 2082605 GCGAGATGTGATTTTGTCGAACATGAC 2082579 >seq1157 Length=2784775 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||| ||||| ||||| || | |||||||| || | ||||| |||||||||||| || Sbjct 2749602 ATCTCTGTGCACAGATTGCTGGATTTGATAGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2749543 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 2749542 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2749483 Query 63066 GCTTTCCA 63073 || | ||| Sbjct 2749482 GCGTACCA 2749475 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 2748469 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2748410 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 2748409 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2748350 Query 63732 ATGTGCTGAGGTC 63744 |||||||| |||| Sbjct 2748349 ATGTGCTGGGGTC 2748337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| |||| ||| || || || ||||| || || ||||| || || | || || || | Sbjct 2746709 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCAGGA 2746650 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||| || || |||| || || |||||| || | || |||||||||||||| | Sbjct 2746649 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 2746590 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || |||||| | || | || || || |||||||| Sbjct 2746589 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 2746544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622919517783800