Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3478 181 3e-40 seq1157 84.2 6e-11 >seq3478 Length=3494213 Score = 181 bits (200), Expect = 3e-40 Identities = 555/844 (66%), Gaps = 22/844 (3%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 |||||||| | | | ||| || |||||||| ||| | ||| | || ||| | || ||| Sbjct 2083017 ATCAATGGCAAAGTAGCTGAGCGTCCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATC 2083076 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTAT 363547 || | ||||| | || || | || || || || || || || || | ||| | Sbjct 2083077 CACGGGACGGATATCGAAGCAGTCATCGAGACCTACAACCTGCTGTCAGAGAA-GTGG-T 2083134 Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607 |||| |||||| | || || | | |||||||||||| | || ||| |||| | Sbjct 2083135 TCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCT 2083194 Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667 |||| || || |||||||| || ||||||||| |||| ||||| || ||| ||| Sbjct 2083195 GCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACGACACGCTAAAGCATT 2083254 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCA 363726 | || || || ||||| || || || ||||| || | || | || | | || Sbjct 2083255 GCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGTGGCAGTCAGCTGCATTAGATCCA 2083314 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | | || ||||| |||||| || | || || ||||| || || ||| | | Sbjct 2083315 C-GGGGAGCTACATCGCCGGCACCAACGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGG 2083373 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCGT 363844 || | |||| || ||| | || || || ||||| || | |||| | || || | Sbjct 2083374 GTTTACAACAACACAGCGCGTTATGTTGATCAGGGGGGCAACAAAAGACC--CGGCGCCT 2083431 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || ||||| || ||||| || |||| | ||||| || || ||||| ||| | Sbjct 2083432 TCGCCATGTACCTGGAGCCCTGGCACTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGA 2083491 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 |||||||||| ||||| ||| || | || |||||||| || || ||| | |||||| Sbjct 2083492 ACACGGGAAAGGAGGAGCAGCGAGCCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACC 2083551 Query 363965 ATTTTATGAAGCGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||||| |||||| || ||| | ||||| || | || || ||| || Sbjct 2083552 TCTTCATGAAGCGGGTGGAGAACAACGAAG-ACTGGTCCCTGATGTGTCCGGCCGACTGC 2083610 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTG--CTCTATACGAAAAGTATGAAT 364081 || || || || ||||| || || | || | ||||| || | | ||||| Sbjct 2083611 CCCGGGCTGGATGAGTGCTGGGGGGAGGAGTTTGAAGAACTCTACACCAGA--TATGAGA 2083668 Query 364082 CGGAGGGAAAGG---CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 |||||| | || ||| | | || ||| ||||||||| ||| ||||| | Sbjct 2083669 AGGAGGGGAGGGTGAAGCGTGTG---GTGAAGGCTCAGCAGCTATGGTATGCAATCATCG 2083725 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | ||||||| || || || || || || ||| | ||||||||| | |||||| | ||| Sbjct 2083726 AGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTACAAAGATGCCTGCAACAGGAAGA 2083785 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 |||||||||| | || || || || || |||||||| || || || || | || | Sbjct 2083786 GCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAAATCGTCGAGT 2083845 Query 364259 ACAC 364262 |||| Sbjct 2083846 ACAC 2083849 >seq1157 Length=2784775 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 |||||||| |||||||| |||||||| ||| | ||| | || |||||| | ||| | Sbjct 2748995 GGGGCGTTCGCTATGTACCTCGAGCCGTGGCATTCTGATGTGTTCGAGTTTTTGGAGTTG 2749054 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| |||||||| ||||| || | | || || || ||||| | || | ||| | Sbjct 2749055 AAGAAGAACACGGGTAAAGAAGAGCAGAGGGCGCGGGACCTGTTTTTCGCCTTGTGGATC 2749114 Query 363958 TCTGACCATTTTATGAAGCGCGTGGA 363983 | |||| |||||||||||| ||||| Sbjct 2749115 CCAGACCTTTTTATGAAGCGAGTGGA 2749140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303294234280010