Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3478 201 1e-46 seq1157 113 4e-20 seq3522 107 2e-18 >seq3478 Length=3494213 Score = 201 bits (222), Expect = 1e-46 Identities = 961/1508 (64%), Gaps = 42/1508 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||||||||| || | | ||| || || || | ||| ||| ||| Sbjct 2084455 TTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCC 2084396 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || |||||||| | || | Sbjct 2084395 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGC 2084336 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || ||| || || ||| | ||||| ||| ||| ||||| Sbjct 2084335 AGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 2084276 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || ||||||||||||||||| | |||||||| || | || | Sbjct 2084275 AGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAG 2084216 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 |||| | | || |||| || | | || |||||||| ||||| |||| || Sbjct 2084215 CCTTCGTACGTCTCATAGGTGCCG--AGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAG 2084158 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || | |||| || ||||| || || |||||||||| || || ||| || Sbjct 2084157 CGGCATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAA 2084098 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || |||| || | |||||||| || | ||||| | || | || || |||| Sbjct 2084097 AGGGATAACGCATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCC 2084038 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 || |||||| | |||| || || | || || || |||||||| | Sbjct 2084037 TGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCT 2083978 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCAAACCG 145593 | |||||||| | || | ||| || || | | |||| || |||| ||||||| | Sbjct 2083977 TGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCC--AATTTTTTAAAGTCATA--- 2083923 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 || | ||| | || | | |||| |||| || |||| ||| ||||| ||| Sbjct 2083922 AGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCA- 2083864 Query 145654 CTCCTCGGCGTCGCT---GTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGT 145710 ||||| | | ||| ||| | ||||| || | ||| | ||||| || |||||||| Sbjct 2083863 --CCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGT 2083806 Query 145711 TCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCC 145770 |||||||| ||||| || || ||||||||||| || || ||||||| ||||||||| Sbjct 2083805 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGT 2083746 Query 145771 GCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 || || || ||||| ||| | ||| | || | | | ||| || |||| Sbjct 2083745 CCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAT--AGCTGCTGAGCCTTCACCACA 2083688 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 ||| | ||||| | || ||| | ||||||| || |||||| | || || Sbjct 2083687 CGCTTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAG 2083628 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 || || ||| ||||| || | | ||||||||||| ||||| | ||||| | Sbjct 2083627 CACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCC 2083568 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGC 146006 || |||| ||| || | || || | |||||| ||||| | || ||| | || | ||| Sbjct 2083567 ACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGC 2083508 Query 146007 AATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACG 146066 ||||| ||| |||| ||||| | || | | | | || |||||| | Sbjct 2083507 --TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGG 2083450 Query 146067 GTTCAATATAGACGGCGAGGGCTCC---TTTTCGTTTGCCACCCTGGTCCACGTGACGTA 146123 | || | || | ||||| ||| || | || ||||| ||||| || || | ||| Sbjct 2083449 GCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCG 2083390 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGT 146183 | ||||||| | || | || ||| || ||| ||| ||| |||||| || | Sbjct 2083389 CTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGG 2083330 Query 146184 TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACT 146243 || | | || ||| | | ||| || |||||| | || || | | | Sbjct 2083329 CGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATT 2083270 Query 146244 TGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTTCG 146301 |||| || |||||| | ||||| |||||||| || || ||||| || |||| Sbjct 2083269 TGGAGATGAGGGCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTC- 2083211 Query 146302 AATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGT 146361 ||| ||||||| ||||| | ||| ||||| | | || || || ||| | || Sbjct 2083210 -ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGT 2083152 Query 146362 CGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTT 146420 |||| ||||| || || || || || | || || || || ||||| | ||| Sbjct 2083151 CGGGGAGGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTAGGTCTCGATGACTGCTT 2083093 Query 146421 GAATGT-CGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 || | |||| || || || |||| ||| || | |||||||||||| || || ||||| Sbjct 2083092 CGATATCCGTC-CCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCA 2083034 Query 146480 GCCACTT---GATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAA 146536 || |||| |||| ||||||| || ||| | |||||| || ||| | || || Sbjct 2083033 GCTACTTTGCCATTG---ATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAG 2082977 Query 146537 AATTTGTA 146544 || ||||| Sbjct 2082976 AAGTTGTA 2082969 >seq1157 Length=2784775 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| |||||| ||||||| || ||||| |||||||||| Sbjct 2749613 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATAGTGCCCAGGTTTTGCTGAT 2749554 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 |||| || |||||||| || |||||||| | |||||| ||| ||||| || ||||| Sbjct 2749553 TACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCG 2749494 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 2749493 ACTCAATGAT 2749484 >seq3522 Length=4083170 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | ||| |||||||| || |||||||| || Sbjct 3190536 GCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3190477 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 3190476 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 3190417 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||| | | ||| | || ||| ||| ||| | Sbjct 3190416 AATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCAAC 3190357 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || ||||| || || ||||||||| Sbjct 3190356 CTCAAGGGTGATGGTCTTGCCAGTGAGCGTTTTCACAAAGATCTGCATG 3190308 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | ||| |||||||| || |||||||| || Sbjct 3219858 GCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3219799 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 3219798 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGG 3219739 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || |||||| ||||| | ||| | || || ||| ||| | Sbjct 3219738 AATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 3219679 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| ||||| ||||| ||||| || || ||||||||| Sbjct 3219678 CTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATG 3219630 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | ||| |||||||| || |||||||| || Sbjct 3190764 GCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3190705 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || |||||||||||||| || |||| | | ||||||||| || || Sbjct 3190704 GAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGG 3190645 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||| | | || | || || | | ||| | Sbjct 3190644 AATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAAC 3190585 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 3190584 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 3190536 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | ||| |||||||| || |||||||| || Sbjct 3190992 GCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3190933 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 3190932 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGG 3190873 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || |||||| ||||| | ||| | || || ||| ||| | Sbjct 3190872 AATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 3190813 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 3190812 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 3190764 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | ||| |||||||| || |||||||| || Sbjct 3191220 GCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3191161 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 3191160 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGG 3191101 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || |||||| ||||| | ||| | || || ||| ||| | Sbjct 3191100 AATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 3191041 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 3191040 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 3190992 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | ||| |||||||| || |||||||| || Sbjct 3191448 GCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3191389 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || |||||||||||||| || |||| | | ||||||||| || || Sbjct 3191388 GAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGG 3191329 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||| | | || | || || | | ||| | Sbjct 3191328 AATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAAC 3191269 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 3191268 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 3191220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | |||||| || | || | ||| |||||||| || |||||||| || Sbjct 3191675 CCACCCCTGAGACGCAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3191616 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 3191615 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 3191556 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | ||| | || || ||| ||| | Sbjct 3191555 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 3191496 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 3191495 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 3191448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471991824931200