Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3188 122 6e-23 seq1246 98.7 7e-16 seq359 87.8 1e-12 seq3079 84.2 1e-11 seq2944 82.4 5e-11 >seq3188 Length=4951351 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| ||||||||||| ||||||||| |||||||| Sbjct 3048473 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCAAAAACG 3048414 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 3048413 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 3048354 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || |||||||||||| || || || ||||| || || || || Sbjct 3048353 TCATCAGAAAATTTGTGCTGTGTGCCGAGTGTGACAACCCTGAAACTGATCT 3048302 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| |||||||| |||||||||||||||| || ||||| || |||||||| Sbjct 180178 AAGCCCGTTTCCTTGGCTCTGGTTTCGCTAGATAGCAGCTAGGGATAGTGGGAATCTCGT 180119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||| |||||||||||| || Sbjct 180118 TCATCCATTCATGCGTGTCTCTAATTAGATGATGA 180084 >seq1246 Length=655824 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 455164 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGTCTATCGGTCTCGT 455223 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 455224 GCCGGTATTTAGCCTTA 455240 >seq359 Length=4015695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 |||||||||||||||||||||||||| ||||||||||| |||||||||||| | | Sbjct 2439009 CTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGTCTATCGGTCTCGTGCCGGT 2439068 Query 20013 ATTTAGCCTTA 20023 ||||||||||| Sbjct 2439069 ATTTAGCCTTA 2439079 >seq3079 Length=167907 Score = 84.2 bits (92), Expect = 1e-11 Identities = 61/71 (86%), Gaps = 5/71 (7%) Strand=Plus/Plus Query 25926 TCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAA 25980 ||||||||||| || ||||| || ||||||||| |||| ||||||||||||||||| Sbjct 1 TCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAA 60 Query 25981 TTAGATGACGA 25991 ||||||||||| Sbjct 61 TTAGATGACGA 71 >seq2944 Length=6283502 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| | ||| || || ||||| || |||||| | Sbjct 81307 AAGCCCATTCCCTTGGCTGTGGTTTCTCAAGACAGCAGCTAGGGACAGTGGAAATCTCAT 81248 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||| |||||||| | |||||| Sbjct 81247 TCATCCATTCATGCATGTCACTAAGTTGATGAC 81215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334932687889205