Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3478 414 1e-110 seq1157 100 4e-16 >seq3478 Length=3494213 Score = 414 bits (458), Expect = 1e-110 Identities = 1266/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Minus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 2084512 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 2084453 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 2084452 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 2084393 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 2084392 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 2084333 Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 2084332 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 2084273 Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 62426 |||| || | | | || ||||| || ||||| | ||| | Sbjct 2084272 TCCGTTGG--CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 2084215 Query 62427 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 62486 || | || || || || | || || | || || || || ||||| || || || Sbjct 2084214 CTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGG 2084155 Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATG 62546 | ||||| || || || ||||||| | || || ||| || || |||| ||||| | Sbjct 2084154 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 2084095 Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 2084094 GATAACGCATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 2084035 Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 2084034 GGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 2083975 Query 62667 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT---CG 62721 | | || ||||||||||||||| ||| || | || ||| ||| ||| | || Sbjct 2083974 TCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAAGTCCG 2083917 Query 62722 CCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781 | || | || ||||||| | || ||||| |||||||| ||||| || ||||| | Sbjct 2083916 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 2083857 Query 62782 AGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 | | | || |||| | || || ||||| || || || ||||||||||| || Sbjct 2083856 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 2083802 Query 62837 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 | ||| || || || ||||| |||| || ||||| || || | ||| | || || || Sbjct 2083801 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 2083742 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT 62955 ||||| |||| || || || || || | ||| | | || ||||||| | | | || Sbjct 2083741 GTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACACGCTT 2083683 Query 62956 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63015 ||| || | || ||| || || | | ||| ||||| || ||||| | Sbjct 2083682 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 2083623 Query 63016 GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63075 ||||| || || || || |||||||||||| ||||| ||| ||| | || ||| || Sbjct 2083622 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCG 2083563 Query 63076 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 ||||| ||||| ||||| ||||| || || || || || |||| || || ||||| Sbjct 2083562 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTC 2083503 Query 63136 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63195 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| Sbjct 2083502 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAG 2083443 Query 63196 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 ||| ||||| | | || || | |||||| || |||||||| | || | || ||||| Sbjct 2083442 GTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTT 2083383 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 || ||||| ||||||||||| | | || ||||| || ||||| || | ||| || Sbjct 2083382 GTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTA 2083323 Query 63316 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| || ||| | ||| || | || | || || || || || ||| ||||| Sbjct 2083322 GCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGAT 2083263 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | ||||| | |||| ||| || ||||| ||||| || || |||||| ||||| || Sbjct 2083262 GAGGGCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAG 2083203 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 || || ||||| |||| || | | | ||||| ||||| || | ||| || || || Sbjct 2083202 CAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGC 2083143 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 ||| || ||||| || || || || || ||||| ||||| || ||| || |||||| Sbjct 2083142 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 2083083 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 2083082 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 2083023 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63675 || || || | || |||||| |||| ||| || || ||||| ||||||| || || Sbjct 2083022 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 2082963 Query 63676 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 63735 |||| || || || || ||||||| || || || | | ||| | || | Sbjct 2082962 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCAAG 2082903 Query 63736 GGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTA--GGATTGACATAGTTGAAT 63793 || | ||||| || ||| | || | | || | || |||| |||||| | Sbjct 2082902 TGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTAC 2082845 Query 63794 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 | |||||||| || || || || | || || || |||||||| | || || ||||| Sbjct 2082844 AGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCG 2082785 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 63913 || | || || || ||||| || || || | | || || |||||| || || || Sbjct 2082784 ATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCC 2082725 Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTC 63973 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 2082724 GCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTC 2082665 Query 63974 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 64032 || | || | || || | | || |||| | || || || || |||| || Sbjct 2082664 ATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGAT 2082606 Query 64033 ACGAGATGTGATTTTATCAAACATGAC 64059 |||||||||||||| || |||||||| Sbjct 2082605 GCGAGATGTGATTTTGTCGAACATGAC 2082579 >seq1157 Length=2784775 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| ||||| || | ||||| || || | ||||| |||||||||||| || Sbjct 2749602 ATCTCTGTGCACAGATTGCTGGATTTGATAGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2749543 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 2749542 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2749483 Query 62921 GCTTTCCA 62928 || | ||| Sbjct 2749482 GCGTACCA 2749475 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||||||||||||||||| ||||| || || || || | ||| Sbjct 2748469 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2748410 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 2748409 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2748350 Query 63587 ATGTGCTGAGGTC 63599 |||||||| |||| Sbjct 2748349 ATGTGCTGGGGTC 2748337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || || |||||||| || || ||||| || || | || || || | Sbjct 2746709 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCAGGA 2746650 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||| || || |||| || || |||||| || | || |||||||||||||| | Sbjct 2746649 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 2746590 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||| | || | || ||||| |||||||| Sbjct 2746589 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 2746544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633603842978000