Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3478 116 3e-21 seq3522 98.7 8e-16 >seq3478 Length=3494213 Score = 116 bits (128), Expect = 3e-21 Identities = 191/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 129580 GGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTAT 129639 || |||||||||||||| |||| ||||| || ||| |||| | | ||| || ||| || Sbjct 2084002 GGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGAT 2083943 Query 129640 TTTAACATTTCAAAATTGTAC-TCGCCTACATCGATGTCG-ACAAATTGATTGACACAAA 129697 || ||| ||| | || || || || | || || ||| |||| | ||| Sbjct 2083942 GCCAATTTTTTAAAGTCATAAGTCCGCT-CAGGGGTGACGTACATGTTGAGAGCGACA-- 2083886 Query 129698 TCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGC 129757 ||||||| |||||| || || |||| ||| | |||||||||| ||||| | || Sbjct 2083885 --GAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGC 2083828 Query 129758 ACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCAT 129817 | | || || || |||||||||| || || || || || ||| ||||||| |||| Sbjct 2083827 AGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCAT 2083768 Query 129818 CTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 ||||||| | |||||||||||| || ||||| Sbjct 2083767 CTTTGTAGACCATGTACGGCGTCCCGGTTTC 2083737 >seq3522 Length=4083170 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || |||||||| || ||||| ||||| || || | || || ||||||||||| Sbjct 3190621 AAAATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTGATCTTTGCCGGCAAG 3190680 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| |||| ||| ||||||| |||| || |||||||| || || || |||||| Sbjct 3190681 CAGCTAGAAGATGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACC 3190734 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || |||||||| || ||||| ||||| || || | || || ||||||||||| Sbjct 3191305 AAAATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTGATCTTTGCCGGCAAG 3191364 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| |||| ||| ||||||| |||| || |||||||| || || || |||||| Sbjct 3191365 CAGCTAGAAGATGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACC 3191418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419709814628575