Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3478 111 3e-19 seq2855 98.7 2e-15 seq2840 93.3 9e-14 seq680 93.3 9e-14 seq3191 91.5 3e-13 seq3144 91.5 3e-13 seq2844 91.5 3e-13 seq2664 91.5 3e-13 seq558 91.5 3e-13 seq3054 89.7 1e-12 seq2977 89.7 1e-12 seq2955 89.7 1e-12 seq1179 87.8 4e-12 seq148 86.0 1e-11 >seq3478 Length=3494213 Score = 111 bits (122), Expect = 3e-19 Identities = 238/353 (67%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 293907 CTCCTCCTTCGAGGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCC 293966 ||| ||||| ||||||||||| || || | |||||||| |||| |||||||||||| Sbjct 2083862 CTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCC 2083803 Query 293967 CGCATTAGACTGCATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACC 294026 | ||| ||| || |||| ||| ||||||| || | || ||| | || Sbjct 2083802 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCC 2083743 Query 294027 CGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTT 294086 ||||| |||| | || || | | ||| | | ||||||||||||| ||||| Sbjct 2083742 GGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTT 2083683 Query 294087 TGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATC 294146 || ||||||| |||||| ||||||| || ||||| | |||| || | || Sbjct 2083682 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 2083623 Query 294147 AGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAGAGACCACTGGGCATCAGTCTCCACGC 294205 | ||| || ||||| ||| | || || | || ||||| | | | ||||||| | Sbjct 2083622 ATCCAGCCCGGGGCAGTCG-GCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCC 2083564 Query 294206 GCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGC 294258 |||||||||| || ||| || ||||| ||||| |||| || | ||| ||| Sbjct 2083563 GCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGC 2083511 >seq2855 Length=8909189 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 5686529 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5686470 Query 142564 CCCACATCGGGCAGAAGTC 142582 ||||| | |||| |||||| Sbjct 5686469 CCCACGTTGGGCGGAAGTC 5686451 >seq2840 Length=485306 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 3023 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 2964 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 2963 GCCCCACGTTGGGC 2950 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 145056 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 145115 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 145116 CCCCACGTTGGGC 145128 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1597 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1656 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1657 CCCACGTTGGGC 1668 >seq680 Length=3552779 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2897290 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2897231 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 2897230 CCCCACGTTGGGCGGA 2897215 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2889542 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2889483 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2889482 CCCCACGTTGGGC 2889470 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 142494 TGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGT 142553 ||||| | ||||||| |||||||||||||||||| ||||||||||||| |||||| Sbjct 2892573 TGGTGCTACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 2892514 Query 142554 GGGTTCGAGCCCCACATCGGGC-AGAA 142579 |||||||||||||| | |||| |||| Sbjct 2892513 GGGTTCGAGCCCCATGTTGGGCGAGAA 2892487 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2899240 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2899181 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2899180 CCCCACGTTGGGC 2899168 >seq3191 Length=123143 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 119403 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 119462 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 119463 CCCCACGTTGGGC 119475 >seq3144 Length=4646089 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 424635 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 424694 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 424695 CCCCACGTTGGGC 424707 >seq2844 Length=8921268 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 4340818 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4340877 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 4340878 CCCCACGTTGGGC 4340890 >seq2664 Length=10829054 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 188189 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 188130 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 188129 CCCCACGTTGGGC 188117 >seq558 Length=1889458 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 463377 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 463436 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 463437 CCCCACGTTGGGC 463449 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 475771 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 475712 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 475711 CCCCACGTTGGGC 475699 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 477586 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 477527 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 477526 CCCCACGTTGGGC 477514 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 479399 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 479340 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 479339 CCCCACGTTGGGC 479327 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 481212 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 481153 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 481152 CCCCACGTTGGGC 481140 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||| Sbjct 465943 AGCCCGGCTAGCTCAGTCAGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 465884 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 465883 CCCCACGTTGGGC 465871 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 475327 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 475268 Query 142563 CCCCACATCGGGC 142575 ||||| | |||| Sbjct 475267 CCCCATGTTGGGC 475255 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 477104 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 477045 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 477044 CCCCACGTTGGGC 477032 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 478917 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 478858 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 478857 CCCCACGTTGGGC 478845 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 480730 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 480671 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 480670 CCCCACGTTGGGC 480658 >seq3054 Length=136482 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 36480 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 36539 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 36540 CCCACGTTGGGC 36551 >seq2977 Length=7416971 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2181266 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2181207 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2181206 CCCACGTTGGGC 2181195 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3400806 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3400865 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3400866 CCCACGTTGGGC 3400877 >seq2955 Length=6277413 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1478152 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1478211 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1478212 CCCACGTTGGGC 1478223 >seq1179 Length=2179430 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 1923536 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 1923478 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 1923477 TCGAGTCCCGGCAGAGA 1923461 >seq148 Length=4747631 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 4415878 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 4415819 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 4415818 TCCCGGCAGAGA 4415807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027789983639755