Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq3522 178 2e-39
seq3467 87.8 3e-12
>seq3522
Length=4083170
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 3190754 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3190695
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||||| |||||| ||||| || || || || || |||||||| ||||||||||||
Sbjct 3190694 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 3190635
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| || || || ||||| ||| || || ||||| || || || |||| ||||
Sbjct 3190634 TTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAACCTCCAGGGTG 3190575
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || ||||||||||| ||||| ||||||||
Sbjct 3190574 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190537
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 3191438 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3191379
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||||| |||||| ||||| || || || || || |||||||| ||||||||||||
Sbjct 3191378 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 3191319
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| || || || ||||| ||| || || ||||| || || || |||| ||||
Sbjct 3191318 TTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAACCTCCAGGGTG 3191259
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || ||||||||||| ||||| ||||||||
Sbjct 3191258 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3191221
Score = 172 bits (190), Expect = 1e-37
Identities = 169/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 3191666 AGACGCAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3191607
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || |||||||| |||||||| |||
Sbjct 3191606 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCC 3191547
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|| || || ||||| ||||||||| ||| |||||||| | || || |||| ||||
Sbjct 3191546 TTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 3191487
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || ||||||||||| ||||| ||||||||
Sbjct 3191486 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3191449
Score = 168 bits (186), Expect = 1e-36
Identities = 168/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 3190982 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3190923
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || |||||||| |||||||| |||
Sbjct 3190922 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCC 3190863
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|| || || || || ||||||||| ||| |||||||| | || || |||| ||||
Sbjct 3190862 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 3190803
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || ||||||||||| ||||| ||||||||
Sbjct 3190802 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190765
Score = 168 bits (186), Expect = 1e-36
Identities = 168/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 3191210 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3191151
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || |||||||| |||||||| |||
Sbjct 3191150 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCC 3191091
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|| || || || || ||||||||| ||| |||||||| | || || |||| ||||
Sbjct 3191090 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 3191031
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || ||||||||||| ||||| ||||||||
Sbjct 3191030 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190993
Score = 158 bits (174), Expect = 2e-33
Identities = 168/219 (77%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 3190526 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3190467
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || ||||| || ||||||||||||
Sbjct 3190466 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 3190407
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
||||| || || || ||||| ||| |||||||||||| ||| | || || || | |||
Sbjct 3190406 TTGTCCTGGATTTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCAACCTCAAGGGT 3190348
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || ||||| || || || || ||||||||
Sbjct 3190347 GATGGTCTTGCCAGTGAGCGTTTTCACAAAGATCTGCAT 3190309
>seq3467
Length=3272559
Score = 87.8 bits (96), Expect = 3e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
||| |||||| | |||||||||| ||||| ||| |||||||||| ||| |||||
Sbjct 2319196 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 2319137
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030
||||| ||| ||||||||||||||| ||||||||
Sbjct 2319136 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 2319101
Score = 87.8 bits (96), Expect = 3e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
||| |||||| | |||||||||| ||||| ||| |||||||||| ||| |||||
Sbjct 2327754 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 2327813
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030
||||| ||| ||||||||||||||| ||||||||
Sbjct 2327814 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 2327849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921581445404600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |