Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3522 178 2e-39 seq3467 87.8 3e-12 >seq3522 Length=4083170 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 3190754 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3190695 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||||| |||||| ||||| || || || || || |||||||| |||||||||||| Sbjct 3190694 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 3190635 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || || || ||||| ||| || || ||||| || || || |||| |||| Sbjct 3190634 TTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAACCTCCAGGGTG 3190575 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 3190574 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190537 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 3191438 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3191379 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||||| |||||| ||||| || || || || || |||||||| |||||||||||| Sbjct 3191378 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 3191319 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || || || ||||| ||| || || ||||| || || || |||| |||| Sbjct 3191318 TTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAACCTCCAGGGTG 3191259 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 3191258 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3191221 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 3191666 AGACGCAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3191607 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || |||||||| |||||||| ||| Sbjct 3191606 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCC 3191547 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||||||| ||| |||||||| | || || |||| |||| Sbjct 3191546 TTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 3191487 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 3191486 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3191449 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 3190982 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3190923 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || |||||||| |||||||| ||| Sbjct 3190922 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCC 3190863 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || ||||||||| ||| |||||||| | || || |||| |||| Sbjct 3190862 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 3190803 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 3190802 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190765 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 3191210 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3191151 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || |||||||| |||||||| ||| Sbjct 3191150 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCC 3191091 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || ||||||||| ||| |||||||| | || || |||| |||| Sbjct 3191090 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 3191031 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 3191030 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190993 Score = 158 bits (174), Expect = 2e-33 Identities = 168/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 3190526 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 3190467 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||||||| Sbjct 3190466 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 3190407 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || || || ||||| ||| |||||||||||| ||| | || || || | ||| Sbjct 3190406 TTGTCCTGGATTTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCAACCTCAAGGGT 3190348 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || ||||| || || || || |||||||| Sbjct 3190347 GATGGTCTTGCCAGTGAGCGTTTTCACAAAGATCTGCAT 3190309 >seq3467 Length=3272559 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 2319196 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 2319137 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| ||||||||||||||| |||||||| Sbjct 2319136 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 2319101 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 2327754 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 2327813 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| ||||||||||||||| |||||||| Sbjct 2327814 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 2327849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921581445404600