Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3478 518 6e-142 seq3467 132 9e-26 seq1157 100 5e-16 seq2977 93.3 8e-14 >seq3478 Length=3494213 Score = 518 bits (574), Expect = 6e-142 Identities = 1085/1597 (68%), Gaps = 50/1597 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC- 244068 ||||| |||| |||| |||||| | ||| | || |||||||||||| | ||| Sbjct 2084536 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCC---CTCTCT 2084480 Query 244069 --CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 ||| | | || |||||| ||| || | ||||||||| ||||| ||||| ||||| Sbjct 2084479 GTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGG 2084420 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| |||||| || | ||||||| ||| |||||||||| ||||| || ||| Sbjct 2084419 GTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 2084360 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || |||| |||||| |||||||||||||| || | ||| Sbjct 2084359 GAGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTC 2084300 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | ||| | |||| | |||||||| Sbjct 2084299 TCCTTCAGCAGCTTCCAGTCCCACAGGTCCGT-------TGGCGTCTTCT--CCCACATG 2084249 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | ||||| || || || ||| ||||| ||| |||| ||| | Sbjct 2084248 TCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGA-G 2084190 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC-- 244423 | | | |||||||| |||||| | || | ||||| || || || ||||| |||||| Sbjct 2084189 CTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTG 2084130 Query 244424 -ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGA 244481 || ||| || | | |||| | || | || ||||| | ||| | ||||| Sbjct 2084129 GATGTTGAGCAGTT---GAGCCTCGGGGCTT-TCAAAGGGATAACGCATAAGGATGAAAG 2084074 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| |||||| || ||||| || || || ||||| ||| |||| || | | ||| Sbjct 2084073 CATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGG 2084014 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||| ||| ||||| ||||| |||||| |||||||| | ||| | | || | | Sbjct 2084013 CTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTT 2083954 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | ||| |||| | |||||| || || | ||| | | || Sbjct 2083953 TGGTC-ACGGATGCCAATTTTTTAAAGTCATAA--GTCCG----CTCAGGGGTG------ 2083907 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 || || |||||| ||||| |||||| ||||| || |||||||| ||| | | Sbjct 2083906 ---ACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTA 2083850 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| ||| || || ||||||||||| |||||||||||||||||||| | ||| || Sbjct 2083849 GTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGG 2083790 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| ||||||||| || ||||||| |||| | ||| |||||| || ||| Sbjct 2083789 TTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGC 2083730 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 | ||| || | ||| || | | |||||| ||| | || | ||||| Sbjct 2083729 GACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCC 2083670 Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960 ||| || | |||||| || | || ||||| |||||| ||| || || |||||| Sbjct 2083669 TTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGG 2083610 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 || ||||| ||||| || ||| || || || || |||| || |||||||||| Sbjct 2083609 CAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGG 2083550 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 || |||||||| ||||| | ||| |||||||||| | |||||| ||| || |||||| Sbjct 2083549 TCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTC 2083490 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 ||| ||||||||| |||||||| || |||| |||||||||||||| ||| | |||| | Sbjct 2083489 TTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAG 2083430 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGC 245200 |||||||| | |||||||| ||||| || || | | | |||| | | | | Sbjct 2083429 GCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTC 2083370 Query 245201 AGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCC 245260 | | || || | ||||| || |||||||||||| ||||||| ||| || Sbjct 2083369 AACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGAT 2083310 Query 245261 CTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTC 245320 || | | ||||| | || ||| | || || || ||||||||||||||||| | Sbjct 2083309 CTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGC 2083250 Query 245321 TTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAG 245380 || | ||||| || ||||| |||||||| ||||||| |||||| |||||| | Sbjct 2083249 TTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTG 2083190 Query 245381 GACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAG 245440 |||||||| ||| || | | | | ||||| || || ||| ||||||||| || | Sbjct 2083189 GACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCA- 2083131 Query 245441 CGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT-TGTCGCCGTGGATCT 245498 | ||| || || | ||| |||| || | || ||||| | ||| |||||||| Sbjct 2083130 CTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTC-CCGTGGATTC 2083072 Query 245499 GCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTC-GAT-GGGTCCCTCGGGTCCCTT 245556 || || ||||||||| ||||||| || ||| | | | || | | ||| Sbjct 2083071 CCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGAT--CTT 2083014 Query 245557 GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 |||| |||||||||||| || |||||||| |||||| Sbjct 2083013 TAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAG 2082977 >seq3467 Length=3272559 Score = 132 bits (146), Expect = 9e-26 Identities = 107/127 (84%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| |||||||||||||| | |||||| ||||||||| Sbjct 2318169 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCT 2318228 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 2318229 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 2318287 Query 42825 GACGAGG 42831 ||||||| Sbjct 2318288 GACGAGG 2318294 Score = 132 bits (146), Expect = 9e-26 Identities = 107/127 (84%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| |||||||||||||| | |||||| ||||||||| Sbjct 2328781 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCT 2328722 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 2328721 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 2328663 Query 42825 GACGAGG 42831 ||||||| Sbjct 2328662 GACGAGG 2328656 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || ||||| |||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 2317983 CTGTTTAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTCAAC 2318042 Query 42669 TGGATCG 42675 ||||||| Sbjct 2318043 TGGATCG 2318049 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || ||||| |||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 2328967 CTGTTTAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTCAAC 2328908 Query 42669 TGGATCG 42675 ||||||| Sbjct 2328907 TGGATCG 2328901 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 2319106 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 2319165 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 2319166 GGTGGGCGAGTACCAG 2319181 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 2327844 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 2327785 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 2327784 GGTGGGCGAGTACCAG 2327769 >seq1157 Length=2784775 Score = 100 bits (110), Expect = 5e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || ||||| | ||| ||||| ||||||| || | |||||| Sbjct 2750586 CACCTGAAACTCTCCTGAAAGCACCCTGCGGGTGTAGATGTTGCTGGTGTATGCCTCGAT 2750527 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| | || ||||| ||||| || ||| || || ||||| || |||| ||||| Sbjct 2750526 GGACTCATTATTACCCAGGATCTGGGCAGTGGATGCTGTGGGCATTGGGGACAAAAGCAG 2750467 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATG 244243 || |||||||| || ||||| ||||| Sbjct 2750466 GCTATTCCTCACACCATGCCTGAGGATG 2750439 >seq2977 Length=7416971 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || | || || ||| | || || || |||||||||||||| || | || || Sbjct 6481990 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 6481931 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | |||| |||||| ||| ||| || || ||||| || || | || ||| ||||| ||| Sbjct 6481930 GCTATCTACTGGCTGAAGAAGAGGGGGTTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 6481871 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||||||||||| Sbjct 6481870 ATTAGCAGGGACGAGG 6481855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944297235926800