Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq3478 518 6e-142
seq3467 132 9e-26
seq1157 100 5e-16
seq2977 93.3 8e-14
>seq3478
Length=3494213
Score = 518 bits (574), Expect = 6e-142
Identities = 1085/1597 (68%), Gaps = 50/1597 (3%)
Strand=Plus/Minus
Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC- 244068
||||| |||| |||| |||||| | ||| | || |||||||||||| | |||
Sbjct 2084536 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCC---CTCTCT 2084480
Query 244069 --CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126
||| | | || |||||| ||| || | ||||||||| ||||| ||||| |||||
Sbjct 2084479 GTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGG 2084420
Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186
||||| |||||| || | ||||||| ||| |||||||||| ||||| || |||
Sbjct 2084419 GTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 2084360
Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246
|| || ||||| || |||| |||||| |||||||||||||| || | |||
Sbjct 2084359 GAGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTC 2084300
Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306
| ||| ||||||||||||| | ||| | |||| | ||||||||
Sbjct 2084299 TCCTTCAGCAGCTTCCAGTCCCACAGGTCCGT-------TGGCGTCTTCT--CCCACATG 2084249
Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366
|| |||| || | ||||| || || || ||| ||||| ||| |||| ||| |
Sbjct 2084248 TCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGA-G 2084190
Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC-- 244423
| | | |||||||| |||||| | || | ||||| || || || ||||| ||||||
Sbjct 2084189 CTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTG 2084130
Query 244424 -ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGA 244481
|| ||| || | | |||| | || | || ||||| | ||| | |||||
Sbjct 2084129 GATGTTGAGCAGTT---GAGCCTCGGGGCTT-TCAAAGGGATAACGCATAAGGATGAAAG 2084074
Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541
| || |||| |||||| || ||||| || || || ||||| ||| |||| || | | |||
Sbjct 2084073 CATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGG 2084014
Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600
|||| ||| ||||| ||||| |||||| |||||||| | ||| | | || | |
Sbjct 2084013 CTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTT 2083954
Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660
|| | ||| |||| | |||||| || || | ||| | | ||
Sbjct 2083953 TGGTC-ACGGATGCCAATTTTTTAAAGTCATAA--GTCCG----CTCAGGGGTG------ 2083907
Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720
|| || |||||| ||||| |||||| ||||| || |||||||| ||| | |
Sbjct 2083906 ---ACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTA 2083850
Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780
||||||| ||| || || ||||||||||| |||||||||||||||||||| | ||| ||
Sbjct 2083849 GTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGG 2083790
Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840
||| ||| ||||||||| || ||||||| |||| | ||| |||||| || |||
Sbjct 2083789 TTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGC 2083730
Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900
| ||| || | ||| || | | |||||| ||| | || | |||||
Sbjct 2083729 GACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCC 2083670
Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960
||| || | |||||| || | || ||||| |||||| ||| || || ||||||
Sbjct 2083669 TTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGG 2083610
Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020
|| ||||| ||||| || ||| || || || || |||| || ||||||||||
Sbjct 2083609 CAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGG 2083550
Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080
|| |||||||| ||||| | ||| |||||||||| | |||||| ||| || ||||||
Sbjct 2083549 TCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTC 2083490
Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140
||| ||||||||| |||||||| || |||| |||||||||||||| ||| | |||| |
Sbjct 2083489 TTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAG 2083430
Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGC 245200
|||||||| | |||||||| ||||| || || | | | |||| | | | |
Sbjct 2083429 GCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTC 2083370
Query 245201 AGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCC 245260
| | || || | ||||| || |||||||||||| ||||||| ||| ||
Sbjct 2083369 AACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGAT 2083310
Query 245261 CTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTC 245320
|| | | ||||| | || ||| | || || || ||||||||||||||||| |
Sbjct 2083309 CTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGC 2083250
Query 245321 TTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAG 245380
|| | ||||| || ||||| |||||||| ||||||| |||||| |||||| |
Sbjct 2083249 TTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTG 2083190
Query 245381 GACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAG 245440
|||||||| ||| || | | | | ||||| || || ||| ||||||||| || |
Sbjct 2083189 GACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCA- 2083131
Query 245441 CGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT-TGTCGCCGTGGATCT 245498
| ||| || || | ||| |||| || | || ||||| | ||| ||||||||
Sbjct 2083130 CTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTC-CCGTGGATTC 2083072
Query 245499 GCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTC-GAT-GGGTCCCTCGGGTCCCTT 245556
|| || ||||||||| ||||||| || ||| | | | || | | |||
Sbjct 2083071 CCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGAT--CTT 2083014
Query 245557 GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593
|||| |||||||||||| || |||||||| ||||||
Sbjct 2083013 TAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAG 2082977
>seq3467
Length=3272559
Score = 132 bits (146), Expect = 9e-26
Identities = 107/127 (84%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| |||| || ||||| |||||||||||||| | |||||| |||||||||
Sbjct 2318169 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCT 2318228
Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| ||| ||| | ||||||||| || |||||||| ||||| |||||||||||
Sbjct 2318229 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 2318287
Query 42825 GACGAGG 42831
|||||||
Sbjct 2318288 GACGAGG 2318294
Score = 132 bits (146), Expect = 9e-26
Identities = 107/127 (84%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| |||| || ||||| |||||||||||||| | |||||| |||||||||
Sbjct 2328781 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCT 2328722
Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| ||| ||| | ||||||||| || |||||||| ||||| |||||||||||
Sbjct 2328721 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 2328663
Query 42825 GACGAGG 42831
|||||||
Sbjct 2328662 GACGAGG 2328656
Score = 86.0 bits (94), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668
||||| || ||||| |||||| |||| ||| | ||||||||||| |||||||||||||||
Sbjct 2317983 CTGTTTAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTCAAC 2318042
Query 42669 TGGATCG 42675
|||||||
Sbjct 2318043 TGGATCG 2318049
Score = 86.0 bits (94), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668
||||| || ||||| |||||| |||| ||| | ||||||||||| |||||||||||||||
Sbjct 2328967 CTGTTTAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTCAAC 2328908
Query 42669 TGGATCG 42675
|||||||
Sbjct 2328907 TGGATCG 2328901
Score = 84.2 bits (92), Expect = 4e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
||| || ||||| |||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct 2319106 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 2319165
Query 43130 CGTCGCCGACTACCAG 43145
|| | ||| ||||||
Sbjct 2319166 GGTGGGCGAGTACCAG 2319181
Score = 84.2 bits (92), Expect = 4e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
||| || ||||| |||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct 2327844 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 2327785
Query 43130 CGTCGCCGACTACCAG 43145
|| | ||| ||||||
Sbjct 2327784 GGTGGGCGAGTACCAG 2327769
>seq1157
Length=2784775
Score = 100 bits (110), Expect = 5e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155
||||||||||||||| || ||||| | ||| ||||| ||||||| || | ||||||
Sbjct 2750586 CACCTGAAACTCTCCTGAAAGCACCCTGCGGGTGTAGATGTTGCTGGTGTATGCCTCGAT 2750527
Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215
| ||| | || ||||| ||||| || ||| || || ||||| || |||| |||||
Sbjct 2750526 GGACTCATTATTACCCAGGATCTGGGCAGTGGATGCTGTGGGCATTGGGGACAAAAGCAG 2750467
Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATG 244243
|| |||||||| || ||||| |||||
Sbjct 2750466 GCTATTCCTCACACCATGCCTGAGGATG 2750439
>seq2977
Length=7416971
Score = 93.3 bits (102), Expect = 8e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||| || | || || ||| | || || || |||||||||||||| || | || ||
Sbjct 6481990 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 6481931
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815
| |||| |||||| ||| ||| || || ||||| || || | || ||| ||||| |||
Sbjct 6481930 GCTATCTACTGGCTGAAGAAGAGGGGGTTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 6481871
Query 42816 ATCAGCAGGGACGAGG 42831
|| |||||||||||||
Sbjct 6481870 ATTAGCAGGGACGAGG 6481855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944297235926800
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