Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3522 123 6e-23
>seq3522
Length=4083170
Score = 123 bits (136), Expect = 6e-23
Identities = 170/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || || || | ||| || || ||||| || ||||
Sbjct 3190767 CATG-CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3190709
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| ||||| || ||||||| || || || || |||||||| | ||| || |
Sbjct 3190708 CAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGG---T 3190652
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
| ||| || ||||| || ||||||||||| || ||||||||||| || | || || |
Sbjct 3190651 CGGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTG 3190592
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| || || || ||||| ||||| ||||||||
Sbjct 3190591 GCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190537
Score = 123 bits (136), Expect = 6e-23
Identities = 170/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || || || | ||| || || ||||| || ||||
Sbjct 3191451 CATG-CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3191393
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| ||||| || ||||||| || || || || |||||||| | ||| || |
Sbjct 3191392 CAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGG---T 3191336
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
| ||| || ||||| || ||||||||||| || ||||||||||| || | || || |
Sbjct 3191335 CGGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTG 3191276
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| || || || ||||| ||||| ||||||||
Sbjct 3191275 GCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3191221
Score = 113 bits (124), Expect = 1e-19
Identities = 165/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || || || | ||| || || ||||| || ||||
Sbjct 3190539 CATG-CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3190481
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| ||||| || ||||| | || || || || |||||||| | ||| || |
Sbjct 3190480 CAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG 3190421
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| || ||||||||||| || |||||||| || || | ||||| | |
Sbjct 3190420 GGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCT 3190361
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || || || || || || || ||||||||
Sbjct 3190360 CAACCTCAAGGGTGATGGTCTTGCCAGTGAGCGTTTTCACAAAGATCTGCAT 3190309
Score = 111 bits (122), Expect = 4e-19
Identities = 167/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || || || | ||| || || ||||| || ||||
Sbjct 3190995 CATG-CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3190937
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| ||||| || ||||| | || || || || |||||||| | ||| || |
Sbjct 3190936 CAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---T 3190880
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
| ||| || || || |||||||||||||| || || ||||| || || | || || |
Sbjct 3190879 CGGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGG 3190820
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| || || || ||||| ||||| ||||||||
Sbjct 3190819 GCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190765
Score = 111 bits (122), Expect = 4e-19
Identities = 167/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || || || | ||| || || ||||| || ||||
Sbjct 3191223 CATG-CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3191165
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| ||||| || ||||| | || || || || |||||||| | ||| || |
Sbjct 3191164 CAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---T 3191108
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
| ||| || || || |||||||||||||| || || ||||| || || | || || |
Sbjct 3191107 CGGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGG 3191048
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| || || || ||||| ||||| ||||||||
Sbjct 3191047 GCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190993
Score = 105 bits (116), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| | ||| | || || || || | ||| || || ||||| || |||||
Sbjct 3191678 TGCCCACCCCTGAGACGCAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 3191619
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||| ||||| || ||||| | || || || || |||||||| | ||| || ||
Sbjct 3191618 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---TCG 3191562
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || || || ||||||||||| || || || ||||| || || | || || |
Sbjct 3191561 GGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGC 3191502
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| || || || ||||| ||||| ||||||||
Sbjct 3191501 TCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3191449
Score = 102 bits (112), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| | ||| | || || || || | ||| || || ||||| || |||||
Sbjct 3219860 TGGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 3219801
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||| ||||| || ||||| | || || || || |||||||| | ||| || ||
Sbjct 3219800 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---TCG 3219744
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || || || |||||||||||||| || || || || || || | || || |
Sbjct 3219743 GGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGC 3219684
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| || || || || || || || ||||||||
Sbjct 3219683 TCAACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCAT 3219631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179600668585290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |