Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3478 172 7e-38 seq3467 91.5 2e-13 seq2977 82.4 9e-11 >seq3478 Length=3494213 Score = 172 bits (190), Expect = 7e-38 Identities = 881/1382 (64%), Gaps = 26/1382 (2%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 2084416 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2084357 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || | || || |||||||| | | || | || || ||| Sbjct 2084356 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 2084297 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || || | |||||| | | | ||| | | || |||||| || ||||||| Sbjct 2084296 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGA 2084237 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || || | | ||||| || || | ||||| || | ||| | | |||| Sbjct 2084236 ATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGC 2084177 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| ||||||| || | || || | |||||| |||||||| || | || | || Sbjct 2084176 TCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA--GCA 2084119 Query 114242 -TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCT 114298 ||| |||||| | ||||| | || ||| || || || |||| || | || Sbjct 2084118 GTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAAGCATCAGCCAATCCC 2084060 Query 114299 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 114358 ||||| |||| || || || | || | ||| || ||| | | || ||||| || Sbjct 2084059 TGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG 2084000 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 || | || | ||||||||| | || | || || | || || || | ||| Sbjct 2083999 TAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATGC 2083941 Query 114419 AGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 |||| || ||| || | || ||| |||| ||| | || |||| || Sbjct 2083940 CAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGA 2083884 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||||||| || || | ||| ||||| ||||||||| | |||||||| || | Sbjct 2083883 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAG 2083824 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || | ||| |||||||||| |||| || || ||| |||| || ||||| || Sbjct 2083823 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 2083764 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT- 114656 ||| | |||||| |||||||| || || || || |||| || || || | ||| | | Sbjct 2083763 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG 2083704 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | | | || || || || | | |||||||| ||| || | |||||||| ||| Sbjct 2083703 CTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTT 2083645 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 ||||||| || ||| | ||| ||||| || | | || || | || |||| Sbjct 2083644 CAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACC 2083585 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | | | | ||| || ||||||||||||||||| |||||||| || || |||| | Sbjct 2083584 AGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACA 2083525 Query 114837 GATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 | |||| || ||| || | | ||| || || || ||||| ||||| | Sbjct 2083524 GGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAAC 2083466 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAGC 114951 | ||| |||||| || |||||||||| |||| | || ||| | | || | Sbjct 2083465 ACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCC-C 2083407 Query 114952 CTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGA 115011 ||| | ||||| | ||||||| || | || | | |||||| | || || | || Sbjct 2083406 CTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGA 2083347 Query 115012 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGATGTGCATA 115069 ||| || || || || | ||| ||| | || | || || || Sbjct 2083346 ACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGC-TGACTGC-CACG 2083289 Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 ||||| || || || | || ||||| | ||||| | | | || || |||||||||| Sbjct 2083288 CCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTTAGCGTGTCGTAGATCCCC 2083229 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||| |||| |||| | |||| ||||||||||| |||| || ||||| || Sbjct 2083228 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTT 2083169 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTA 115248 ||||| ||||||||||| || | |||||| ||||| || | | |||| | | ||| Sbjct 2083168 CCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTA 2083110 Query 115249 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 |||||| | ||| || || || |||||| || || | | |||| ||| | ||| Sbjct 2083109 GGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCAT 2083050 Query 115309 GT 115310 || Sbjct 2083049 GT 2083048 >seq3467 Length=3272559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 2318294 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 2318235 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||||| || || || ||||||||||||||||| ||||||||| Sbjct 2318234 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 2318185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 2328656 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 2328715 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||||| || || || ||||||||||||||||| ||||||||| Sbjct 2328716 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 2328765 >seq2977 Length=7416971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | ||||| || || ||| ||| || || ||||| | |||| ||||| Sbjct 6481855 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAACCCCCTCTTCT 6481914 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||| | || ||| ||||||||| ||||||||||| || |||||| Sbjct 6481915 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 6481964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597327055099400