Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3478 127 2e-24 seq3522 96.9 3e-15 >seq3478 Length=3494213 Score = 127 bits (140), Expect = 2e-24 Identities = 483/741 (65%), Gaps = 34/741 (5%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| | ||||||||| || | ||| || || | || | |||||| ||| | | Sbjct 2084457 GGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGG 2084398 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||| ||||||||||| || || ||||| || || | || || ||||| | || Sbjct 2084397 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACA 2084338 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC---GTAGTTTGGACCAAT 146239 ||||| ||| |||||||| ||| | ||||| ||| | || || ||| | Sbjct 2084337 GCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTT---CCAGT 2084281 Query 146240 TCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACA 146299 ||||| | ||||| || | | | ||||||| || | | |||| || Sbjct 2084280 CCCACA---GGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCA 2084224 Query 146300 GGGGGCTATTCT-CGTACGATTCATAAGGACCGTCGATCTT-GGCCAGTTCGCAGCTAGC 146357 || | | || |||||| ||||| | ||| | || |||||| |||||||| || Sbjct 2084223 CCGG-CGAGCCTTCGTACGTCTCATAGGTGCCGA-GCTCGGCGGCCAGCTCGCAGCTCGC 2084166 Query 146358 TTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG-GCCTCCT 146416 ||||| ||| | | | || || ||||| |||| | ||||| || || ||||| Sbjct 2084165 TTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA-GCAGTTGAGCCTCGG 2084107 Query 146417 CGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACA 146475 ||| || |||| ||| || | ||| | || || || || | ||||| | ||||| Sbjct 2084106 GGCTTTCAAAGGG-ATAACGCATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATT 2084048 Query 146476 CCAACGGGGCGGTGTTTCTTGTTA---CTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTG 146532 || | || | ||| | |||| || | || | || | | | |||| |||| Sbjct 2084047 CCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG---TAGTAGTTG 2083991 Query 146533 CTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACA 146592 ||||||| | |||||| | || | || | | ||| |||| ||| | || | Sbjct 2083990 ATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACG-GATGC--CA----A 2083938 Query 146593 TAGTCAAATGTTTTAGTT----TTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAA 146648 | | || || || | | | | ||||| || |||||| |||| |||||||| Sbjct 2083937 TTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAG 2083878 Query 146649 GTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCT 146708 || || || || |||||||||| |||| || || || | |||||||||||| Sbjct 2083877 ATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCT 2083818 Query 146709 GCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAG 146768 |||||||||| |||||| ||| | ||||| || | ||||||||| || ||||||| Sbjct 2083817 GCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGAC 2083758 Query 146769 CATGTACGGTCCCCCGGTTTC 146789 ||||||||| ||||||||| Sbjct 2083757 CATGTACGGCGTCCCGGTTTC 2083737 >seq3522 Length=4083170 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || ||| Sbjct 3219827 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 3219768 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| ||||| || ||||||||||| ||| |||||| |||| Sbjct 3219767 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 3219708 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || |||| || | || || || || || ||| Sbjct 3219707 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTACCAGTTAGGGTT 3219648 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 3219647 TTCACAAAGATCTGCATG 3219630 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || ||| Sbjct 3190961 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 3190902 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| ||||| || ||||||||||| ||| |||||| |||| Sbjct 3190901 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 3190842 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| || || || Sbjct 3190841 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 3190782 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 3190781 TTCACGAAGATCTGCATG 3190764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || ||| Sbjct 3191189 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 3191130 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| ||||| || ||||||||||| ||| |||||| |||| Sbjct 3191129 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 3191070 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| || || || Sbjct 3191069 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 3191010 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 3191009 TTCACGAAGATCTGCATG 3190992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 126871 CATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTG 126930 ||||| || |||||| ||||| | | |||| || | || | || ||||| || || Sbjct 3191689 CATTT-CTTTACTGC-CCACCCCTGAGACGCAGAACAAGGTGGAGGGTGGACTCCTTCTG 3191632 Query 126931 AATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCG 126990 || ||||| || | ||||| ||| || ||||| || ||||| |||||| | Sbjct 3191631 GATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCT 3191572 Query 126991 CTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGT 127050 |||||| ||||| || ||||||||||| ||| ||| || ||||| | || | ||| Sbjct 3191571 CTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGT 3191512 Query 127051 GTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 127110 ||| | ||| || || | ||| | || ||||| || || || || || || ||||| Sbjct 3191511 GTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 3191452 Query 127111 CATG 127114 |||| Sbjct 3191451 CATG 3191448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479669933200