Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3144 118 2e-21 seq3111 95.1 2e-14 seq2933 87.8 3e-12 >seq3144 Length=4646089 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || || | ||| || || || || |||||||||||||| ||||||||| || Sbjct 4037864 GCGGTGTTGACCACGTCGAAGCCGACTGTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 4037805 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| || |||| || || || | ||| || |||||||||| ||| | Sbjct 4037804 GGGGAGCAGATGGGATTTCCCATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACC 4037745 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || | || || |||||| | | | || || || || | | ||| | |||||| Sbjct 4037744 ATTGTTTCCCCAAAGATGCCGTTATGTCTGGGCTTCTCCACCAGCAGGCCCGGGTAGAGC 4037685 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| ||||||| || || || | |||| | | ||||| || || ||||| ||| Sbjct 4037684 TCCACAGCATCGACGTGCCCGTACAGCTCCTCCAGCACCGCAGCCATTTCTTTCTCCCCT 4037625 Score = 116 bits (128), Expect = 5e-21 Identities = 184/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| ||||||||||| | |||||||| || || | | | || ||||||| | | | Sbjct 4036794 CCGTCCGGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCGGTCAC 4036735 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 || || ||||| | || || || | ||| | ||| | | || | ||| | ||| Sbjct 4036734 GACAGAGGTGTTGAAGACAAACTGCTTGTAGCTATAATCTGTCTCCTCAATGTGGAAACT 4036675 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||| |||| ||||| |||||| |||| ||||| |||||||| | || || |||||||| Sbjct 4036674 ATCGGGCATCAGAGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGATGCAATGCGGTTCTG 4036615 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| || || | ||| |||||||| | || | |||||| || Sbjct 4036614 GTACTGGAAGCGCTGGT--TAAAGAGCAGCTCGGGGTCAAACTTGAGTTTGAAGTGATAG 4036557 Query 9670 CCGCTGAGTTGCTGGACATA 9689 ||||| || ||||| || || Sbjct 4036556 CCGCTCAGATGCTGCACGTA 4036537 Score = 89.7 bits (98), Expect = 7e-13 Identities = 204/301 (68%), Gaps = 21/301 (7%) Strand=Plus/Minus Query 9964 ACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGTT 10023 |||||||| |||| ||| ||||||||||| || | |||||| |||||||| |||| | Sbjct 4035826 ACCTGATATTTCAGCTTGCCATCCTTGAAGAGTCTCAGCTTGTGCTGCTTTTCCAGGTTG 4035767 Query 10024 TCGCCGTAGATGTGACTGAGATCGACCTGCGAGAGAACGAAGAC-TGTCGAT---AAC-- 10077 || ||||||||||| |||| || |||| || || || ||||| | | || ||| Sbjct 4035766 TCACCGTAGATGTGGTTGAGGTCCACCT--GACAGCAC-AAGACACGCCAATTAAAACTG 4035710 Query 10078 GGCCTTGTTCGaaaaa---------tcaaaaaaCCCAACCATCGCCGTTCGCTCTTACCC 10128 || | || || | ||||||| | | | | | | || | ||||||| Sbjct 4035709 GGTCACATTAAAATGAGTTTGCTTTTCAAAAACCGGGATCTT--CAGCTC-CACTTACCC 4035653 Query 10129 CATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAAAATTGGT 10188 |||| ||| | |||||||| || |||| | ||| || | | || || |||| Sbjct 4035652 CATGACCCTTAGCAACAGTGAAAGCAGGCCCTCTCTTCATGTCAGATTTGAAGAACTGGT 4035593 Query 10189 GTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCGGGGATAA 10248 | || ||||| || |||| || || ||||||| |||||||||| || || || |||| Sbjct 4035592 GGGTGAAGTGCTGTGCGAAGAAGGCAAACATCAAACTGGTGCCCTGCGGGTCTGGTATAA 4035533 Query 10249 A 10249 | Sbjct 4035532 A 4035532 >seq3111 Length=5441797 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| |||||||| | || |||||||| ||| | | || Sbjct 3349087 TCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTTCCAAGCAGG 3349028 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| ||||| ||||| |||| ||| | |||||||| || || |||||| ||| Sbjct 3349027 CCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATGGCATTAGGA 3348968 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 || ||| || | || | ||| | ||| | || | || || | ||| |||||||| Sbjct 3348967 CGGATTTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCACCATAGAGC 3348908 Query 9143 GCTTCCAA--CTCGGCAGCTATCTC 9165 |||| || ||||| ||||| || Sbjct 3348907 TCTTCTAAACCTCGG--GCTATTTC 3348885 >seq2933 Length=7034445 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || || || || || || || | || || ||||||||||| |||||||| |||| ||| Sbjct 2763505 TTTACTATTTCAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAG 2763446 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || ||| ||| ||| ||||| | ||| || || || |||| ||| | ||||| Sbjct 2763445 CATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTT 2763386 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||||| || | || | ||| || | | ||||| | ||| | ||| | Sbjct 2763385 TCTCCAAATATGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGT 2763326 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || || | ||| | ||||| |||| | || |||||||||| Sbjct 2763325 GCGTCAATGTCATCGTAGAGCTCTTCGAGGTCTCGTGCTATCTCCT 2763280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723695839337000