Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3478 185 1e-41
seq3467 86.0 8e-12
seq1157 86.0 8e-12
seq2977 82.4 9e-11
>seq3478
Length=3494213
Score = 185 bits (204), Expect = 1e-41
Identities = 835/1298 (64%), Gaps = 28/1298 (2%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||||
Sbjct 2084416 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2084357
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| |||||||| || | || || |||||||| | | || || |||
Sbjct 2084356 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 2084297
Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082
|| || | |||||| | | | ||| | | ||||||||| || |||||||
Sbjct 2084296 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGA 2084237
Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142
|| || | | | ||||| || || | |||||||| | ||| | | ||||
Sbjct 2084236 ATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGC 2084177
Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202
||| ||||||| || | || || | |||||| |||||||| || | || | ||
Sbjct 2084176 TCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA--GCA 2084119
Query 116203 -TTG-GCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259
||| |||||| | ||||| | || | ||| || || || |||| || | ||
Sbjct 2084118 GTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAAGCATCAGCCAATCCC 2084060
Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 116319
||||| |||| || || || | || | ||| || ||| | | || ||||| ||
Sbjct 2084059 TGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG 2084000
Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379
|| | || | ||||||||| | || | || || | || || || | |||
Sbjct 2083999 TAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATGC 2083941
Query 116380 AGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438
|||| || ||| || | || ||| |||| ||| | || |||| ||
Sbjct 2083940 CAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGA 2083884
Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498
|||||||| || || | ||| ||||| ||||||||| | |||||||| || |
Sbjct 2083883 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAG 2083824
Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558
|| | ||| |||||||||| |||| || || ||| |||| || ||||| ||
Sbjct 2083823 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 2083764
Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT- 116617
||||| ||| || |||||||| || || || || |||| || || || | ||||| |
Sbjct 2083763 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG 2083704
Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCT 116677
| | | || || || || | | |||||||| ||| || | |||||||| | |
Sbjct 2083703 CTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTT 2083645
Query 116678 CAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736
||||||| || ||| |||| ||| ||||| || | | ||||| | || |||
Sbjct 2083644 CAAACTCCTCCCCC-CAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGAC 2083586
Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796
|| | | | ||| |||||||||||||||||||| |||||||| || || ||||
Sbjct 2083585 CAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAC 2083526
Query 116797 AGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 116855
|| |||| || ||| || | | ||| || || || ||||| ||||| |
Sbjct 2083525 AGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAA 2083467
Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGACCAG 116911
| ||| |||||| || |||||||||| |||| | || ||| | | ||
Sbjct 2083466 CACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCC- 2083408
Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAG 116971
|||| | ||||| | ||| || ||| | || | | |||||| | || || | |
Sbjct 2083407 CCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGG 2083348
Query 116972 ATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGA--CATCGTGGATGTGCA 117028
| ||| || || || ||| | | || || ||| | || | || || ||
Sbjct 2083347 AACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGT-GGATCTAATGCAGC-TGACTGC-CA 2083291
Query 117029 TACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCC 117088
||||| || || || | || ||||| | ||||| | | | || || |||||||||
Sbjct 2083290 CGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTTAGCGTGTCGTAGATCC 2083231
Query 117089 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 117148
| ||||| |||| |||| | |||| ||||||||||| |||| || ||||| |
Sbjct 2083230 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGG 2083171
Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186
| ||||| ||||||||||| || | |||||| |||||
Sbjct 2083170 TTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC 2083133
>seq3467
Length=3272559
Score = 86.0 bits (94), Expect = 8e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 2318294 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 2318235
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648
||| |||||| || || || || || |||||||||||||||||||||
Sbjct 2318234 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 2318185
Score = 86.0 bits (94), Expect = 8e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 2328656 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 2328715
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648
||| |||||| || || || || || |||||||||||||||||||||
Sbjct 2328716 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 2328765
>seq1157
Length=2784775
Score = 86.0 bits (94), Expect = 8e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||||| ||| | | ||||||| ||||||| ||| ||||| |||||
Sbjct 2750552 TAGATGTTGCTGGTGTATGCCTCGATGGACTCATTATTACCCAGGATCTGGGCAGTGGAT 2750493
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994
||||||||||| || | || || ||||| ||
Sbjct 2750492 GCTGTGGGCATTGGGGACAAAAGCAGGCTATT 2750461
>seq2977
Length=7416971
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | ||||| || || ||| ||| || || ||||| | |||| |||||
Sbjct 6481855 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAACCCCCTCTTCT 6481914
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648
||| |||| | || ||| |||||| |||||||||||||| || ||||||
Sbjct 6481915 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 6481964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613479937273800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |