Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3522 127 2e-24 >seq3522 Length=4083170 Score = 127 bits (140), Expect = 2e-24 Identities = 170/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 3190537 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 3190478 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 3190477 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 3190418 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || ||| | || | | |||||||| | || | Sbjct 3190417 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCAA 3190358 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 | || | |||||||| ||||| || |||||||| |||||||| ||||| ||||| Sbjct 3190357 CCTCAAGGGTGATGGTCTTGCCAGTGAGCGTTTTCACAAAGATCTGCATGTTTGC 3190303 Score = 125 bits (138), Expect = 8e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| ||| || || | ||||| || || || | || |||||| ||||| ||||| Sbjct 3219864 TTATTGGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 3219805 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || ||||| | || || ||||||||||| || || |||| | ||||||||| Sbjct 3219804 GTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 3219745 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 || || | || |||||| ||| ||| || ||||| || | | ||||| || | Sbjct 3219744 GGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGG 3219685 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || | |||||||| || || || || ||||| |||||||| ||||| || Sbjct 3219684 CTCAACCTCGAGAGTGATGGTCTTACCAGTTAGGGTTTTCACAAAGATCTGCATGTT 3219628 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || || ||||||||||| || || Sbjct 3191640 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 3191581 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||||| || | || |||||| ||| |||||| ||||| | Sbjct 3191580 GATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 3191521 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || |||| |||||||| ||||| || || || || || Sbjct 3191520 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 3191461 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 3191460 GAAGATCTGCAT 3191449 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 3190993 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 3190934 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||||| | Sbjct 3190933 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 3190874 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| ||| || ||||| || | | ||||| || | || | Sbjct 3190873 GAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 3190814 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 3190813 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190765 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 3191221 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 3191162 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||||| | Sbjct 3191161 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 3191102 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| ||| || ||||| || | | ||||| || | || | Sbjct 3191101 GAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 3191042 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 3191041 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190993 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 3190765 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 3190706 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||||||| || |||| | ||||||||||| | Sbjct 3190705 AGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGG 3190646 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || ||| | | | | ||||| || | || | Sbjct 3190645 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAA 3190586 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 3190585 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3190537 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 3191449 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 3191390 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||||||| || |||| | ||||||||||| | Sbjct 3191389 AGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGG 3191330 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || ||| | | | | ||||| || | || | Sbjct 3191329 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTGTCACTTGGCTCAA 3191270 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 3191269 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3191221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565213282218600