Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3177 304 1e-76 seq303 93.3 3e-13 >seq3177 Length=5359858 Score = 304 bits (336), Expect = 1e-76 Identities = 955/1467 (65%), Gaps = 12/1467 (1%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | ||||| ||||| || |||||||| | |||||||| || || || Sbjct 5198005 TTTGTCCACGGCGGATACATTTAGAATGCCGTTGGCATCAATGTCAAATGTTACCTCTAT 5197946 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || |||| |||| || ||||| ||| | | |||| | |||||| || Sbjct 5197945 CTGTGGAACACCTCGGGGAGCTGGAGGGATACCTGTGAGGTCAAATTTGCCCAGAAGGTT 5197886 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || ||| || | || || || || || | || || || | | || || Sbjct 5197885 GTTGCATTTGGTCATGGCTCTCTCGCCTTCAAATACCTGAATCAATACACCTGGCTGGTT 5197826 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | |||| | | || || ||||| ||||||| | | Sbjct 5197825 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATTGTGGTGTTTCGCTTTA 5197767 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | ||||||| ||| ||||| ||||| | || ||||| || |||| |||||| | Sbjct 5197766 TCAGAGGTGTCATAACACCGCCTGCGGTTTCAATGCCCAGAGACAGGGGAGCGACATCCA 5197707 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | || || || | || | || || |||||||| | | Sbjct 5197706 GCAGCAGCAGATCTTGGACATTCTCTGAGGTGTCGCCCATGAGGATGGCTGCTTGGACTG 5197647 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | ||||| || || ||||||||||| || |||| | | || || | ||| ||||| | Sbjct 5197646 CTGCACCGTAGGCTACAGCTTCATCTGGGTTAATGCTCTTGTTCAGGTCTTTGCCATTAA 5197587 Query 517668 AAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | || | || |||| || | | || ||||| | | || || ||||| | ||| Sbjct 5197586 AGAAGTCCTGTAAGAGCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACA 5197528 Query 517727 ATTTCATGCA-CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 517785 |||||||| | |||| ||||||||||| || | |||| | |||| ||||| || | Sbjct 5197527 ATTTCATGAATCCTG-GATTTATCCAGCTTGGCATCCTGCAGGGCTTTCTCAACTGGGCC 5197469 Query 517786 AAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 517845 ||| | || || | ||||| || || || || || || || | | | Sbjct 5197468 AAGTGTTCCCCTGAAAAGATCTGAGTTGAGCTCCTCAAAACGTGCCCTTGTGATGGAGGT 5197409 Query 517846 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 | | |||||||||| || || | ||| || | ||||| | | ||||| || || Sbjct 5197408 GTAAAAATCAATTCCCTCAAAGAGAGAGTCGATCTCAATGCTTGCCTGAGTGCTGGAGGA 5197349 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 517965 || | | || || | ||||| ||||| | | ||| | | ||| | || ||| Sbjct 5197348 TAAGGTCCTCTTTGCCCTCTCACAAGCTGTACGCAATCTCCTCACTGCTCT--CTTATTC 5197291 Query 517966 ATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 | ||| | || ||| |||||| || || || || ||| | | || | | Sbjct 5197290 TGGCTAATGTCCTTCTTATGTTTTCTTTTAAATTCCTCTACAAAGTGCTTGACCATTTGG 5197231 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| || || || || | | || | |||||| || ||| | || | || | Sbjct 5197230 TTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGAAGTGGCTTTGACCTCAAAGATG 5197171 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||| |||||| | || || || |||||| ||| || || || | |||||| || || Sbjct 5197170 CCAGCTTCAATGGTCAGAATAGACACATCAAAGGTGCCTCCGCCAAGATCAAAGATCAGC 5197111 Query 518144 ACATTCATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 ||||| |||| ||| ||| ||| ||| || ||||| |||| || || || || || Sbjct 5197110 ACATTGCGTTCTCCTGTTTTGCCTTT-ATCCAGGCCATATGCAATGGCTGCTGCTGTGGG 5197052 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 |||||||| || |||| |||||| || |||| || || ||||| || || ||||| Sbjct 5197051 CTCATTAATGATCCTCAGAACATTTAGTCCAGAGATCACCCCAGCATCCTTGGTAGCTTG 5196992 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 ||| || || ||||| ||||| || || || || || || || | | || || || Sbjct 5196991 TCTCTGGGAGTCGTTGAAATAAGCTGGCACTGTGATGACTGCGTTTGACACCCTTTGTCC 5196932 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 | || || || | | ||||||||| | | ||| || ||||||| || || Sbjct 5196931 CAGGTAGGCCTCAGCTATCTCCTTCATTTTAACCAGGACCATGGAGGAAATTTCCTCAGG 5196872 Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442 | || ||||| || || ||| || | | | || || | | | | Sbjct 5196871 ATAGAATGCCTTGGTCTCCCCTTTGTATTCCACCTGGACTTTGGGCTTTCCATTATCGTC 5196812 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 ||| || || || |||||| ||||| || || || || | |||||||||| | ||| Sbjct 5196811 AATCACCTTGAAAGGCCAGAGCTTCATGTCGGACTGTACGACTGGGTCATTAAACTTTCT 5196752 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 ||||| | ||||| |||||||| || || || | || || |||||| |||| | || Sbjct 5196751 TCCAATCAGCCGTTTGGCATCAAAGATTGTGTTATTGGGGTTCATTGCAACTTGGTTCTT 5196692 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||||||||| || |||||| || ||||| | ||||| |||||| || | Sbjct 5196691 GGCAGCATCTCCAATAAGCCTTTCTGTGTCGGTAAAAGCCACATAGCTTGGAGTGGTTCT 5196632 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 ||| || ||||| || ||||| || |||||||| |||| || | || || |||||| Sbjct 5196631 ATTGCCCTGATCGTTGGCAATGATCTCAACTTTGCCATGCTGGAAAACCCCAACACAAGA 5196572 Query 518683 AAAAGTTGTTCCTAAATCAATACCAAT 518709 | | || || || | |||||| ||||| Sbjct 5196571 ATAGGTGGTGCCCAGATCAATGCCAAT 5196545 >seq303 Length=4018286 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| |||||||| || || ||||| || || | | ||| Sbjct 506723 TTTTTGTCCAGGCCATAGGCAATGGCAGCAGCGGTGGGCTCATTGATGATACGAAGGACA 506664 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | ||||||||||| ||||| || | || || ||||| || || Sbjct 506663 TTAAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTGAAGTAG 506604 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| ||||| | ||| || ||||| Sbjct 506603 GCAGGCACAGTCACTACGACACTTGTTAC 506575 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| || || ||| |||| || | || |||| | ||||||||||| |||||||| Sbjct 506088 CAAATATTGTGTTGTTTGGGTTCAAGGCCACTTGGTTCTTGGCTGCATCCCCAATCAGCC 506029 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| || || |||| |||||| || || || | || || || ||||| |||| Sbjct 506028 TCTCTGTGTCAGTGAATGCAACATAGCTGGGTGTAGTCCTGTTTCCCTGGTCATTGGCAA 505969 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| ||||| |||| || | || |||||||| | || || || | |||| Sbjct 505968 TGATTTCCACTTTGCCATGCTGAAAAACTCCTACACAGGAGTAGGTAGTGCCCAGGTCAA 505909 Query 518703 TACCAA 518708 |||||| Sbjct 505908 TACCAA 505903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780645989189830