Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3478 196 6e-45 seq2977 82.4 9e-11 seq1157 82.4 9e-11 >seq3478 Length=3494213 Score = 196 bits (216), Expect = 6e-45 Identities = 952/1487 (64%), Gaps = 48/1487 (3%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| ||| || || ||| | || || |||| || || |||||| Sbjct 2084510 CTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGAC 2084451 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||| |||| ||| | | |||||||| | ||||||| || | Sbjct 2084450 GATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGAT 2084391 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || |||||||| | || || || Sbjct 2084390 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGCAG 2084331 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 ||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 2084330 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 2084271 Query 106081 C-TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | |||| || || ||||||| || | || || | || | | || || || | Sbjct 2084270 CGTTGGCGTCTTCT-CCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTT 2084212 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 106199 | | |||||||||| || | | | |||| || |||||||| |||| | || | Sbjct 2084211 CGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCAT 2084152 Query 106200 GATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAATC 106251 |||||| || |||||||| | |||| || | | | ||||| || Sbjct 2084151 AATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTT--------TC 2084100 Query 106252 AAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 106310 ||| | || || || || || || |||| || | || || || || | || || | Sbjct 2084099 AAAGGGATAACG-CATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCG 2084041 Query 106311 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA 106370 | ||||| ||||| || ||| | | || || || || || | || |||| || | Sbjct 2084040 GCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAA 2083981 Query 106371 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAA 106427 | ||| | || || ||||| | || | | ||| | ||||| | | ||| Sbjct 2083980 CCTTGTTCAAGTTCCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCAT 2083924 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 |||| || ||| |||| ||| | || |||| || |||| ||||||||| | Sbjct 2083923 AAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCG 2083867 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 || ||| ||||| |||||||| | ||||| || || | |||| | ||| || | Sbjct 2083866 CCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 2083807 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | |||| ||||| ||||| ||||| ||||||| ||||| ||||||| |||||| |||| Sbjct 2083806 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCG 2083747 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATG 106666 |||| || || ||||| |||| || ||||| | ||| | | | | | || || Sbjct 2083746 TCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACAC 2083687 Query 106667 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 106726 || || ||| |||||| ||| || | |||||||| ||||||||||||| ||| | Sbjct 2083686 GC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCC-CA 2083629 Query 106727 GCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTC 106785 || || || || || | | | ||||| | || ||||| | | | ||| Sbjct 2083628 GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTC 2083569 Query 106786 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 106845 |||||||||||||| ||||| || |||||||||| | || || || || || Sbjct 2083568 CACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTG 2083509 Query 106846 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 106904 ||| || | || ||| || | | ||| ||||| || | | ||| |||||| | Sbjct 2083508 CTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGG 2083450 Query 106905 GCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGC 106960 |||| || || | |||| | || |||| | |||| | |||| ||||| ||| Sbjct 2083449 GCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCC-CCCTGATCAACATAACGC 2083391 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 |||||| ||| | || | | |||||| | | || | || || || || || Sbjct 2083390 GCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCG 2083331 Query 107021 CGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCC 107077 || || | ||| ||| | || | || || || ||||| || ||||| Sbjct 2083330 GCGAT-GTAGCTCCCCGTGGATCTAATGCAGC-TGACTG-CCACGCCAATCCCTCCAGCT 2083274 Query 107078 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 107137 | || ||||| | || || | | | || || | ||||| || | ||| ||| ||| Sbjct 2083273 GATTTGGAGATGAGGGCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCC 2083214 Query 107138 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 107197 || |||||| |||||||| ||||||| |||||| || || ||||||||||||||| Sbjct 2083213 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGG 2083154 Query 107198 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 107256 || || | ||||| ||||| || | | |||| | || ||| ||||| | ||| | Sbjct 2083153 GTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGC 2083095 Query 107257 ATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || ||||||||| || | ||||| | ||| | ||||| Sbjct 2083094 TTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGT 2083048 >seq2977 Length=7416971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || | | ||| || || || ||| ||| ||||| ||||| | |||| ||||| Sbjct 6481855 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAACCCCCTCTTCT 6481914 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| || ||||| ||| ||||| || ||||||||||| || |||||| ||||| Sbjct 6481915 TCAGCCAGTAGATAGCAGCA-AATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAA 6481973 Query 117412 GCAAAAAGGCGCTC 117425 || | || ||||| Sbjct 6481974 GCCACAATCCGCTC 6481987 >seq1157 Length=2784775 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||||||| || ||||| |||| ||| || || || || Sbjct 2749627 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATAGTGCC 2749568 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || || | || ||||||||| ||||||| ||||||||||| | |||||| || || || Sbjct 2749567 CAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACC 2749508 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || || ||||| |||| | || || | ||||| Sbjct 2749507 AGTTTCTGTCTGCGACTCAATGATGGCGTACCACA 2749473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589954582728200