Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3478 111 2e-19 seq2977 82.4 9e-11 >seq3478 Length=3494213 Score = 111 bits (122), Expect = 2e-19 Identities = 598/950 (63%), Gaps = 8/950 (1%) Strand=Plus/Minus Query 47874 TTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTA 47931 || || || | ||| || ||||| || || || ||||| | ||| |||| || | | Sbjct 2083897 TTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGC--TAGTGTACTCGA 2083840 Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991 ||||| | || || || | || ||||| || |||| ||| || || || | Sbjct 2083839 CGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCC 2083780 Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051 |||| || || || ||||| | ||| | || || || |||||| |||| || || |||| Sbjct 2083779 TGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGA 2083720 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATGTTCGTAT 48110 | | | ||| | | |||||| | ||| ||| | | | || | || ||| Sbjct 2083719 TTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCC-TCCTTCTCATAT 2083661 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCATT 48169 | || || | | ||||| || ||||| | ||| | ||| | ||| || || || Sbjct 2083660 CTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCAC-TCATCCAGCCCGGGGCAGTCGGC 2083602 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 |||||||||| ||||| || || | || | || | |||| || | || || || Sbjct 2083601 CGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGAT 2083542 Query 48230 CCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 ||| || || || | ||||| | || | || || || || | ||| | || || Sbjct 2083541 CCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAG 2083482 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || || ||||| | | ||| ||||| || || | || || || | | || || Sbjct 2083481 CTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGG 2083422 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || ||| || || || ||||| | ||| | || || ||||| ||||| || |||||||| Sbjct 2083421 TCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGG 2083362 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 ||| | || || || || ||||| || | || || || || | | ||| || Sbjct 2083361 GACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCA 2083302 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 || | || | || || || || || ||| || || || || || | || || || Sbjct 2083301 GCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTTAGCGT 2083242 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 || || || || || || || ||||| |||| | || || || || |||| || Sbjct 2083241 GTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTG 2083182 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| ||||| | ||| || | || || || || || | ||||| |||||||| Sbjct 2083181 CGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGA 2083122 Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709 | || || || || || || || | || |||||| || || || | || || Sbjct 2083121 CAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCAC 2083062 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | ||| | ||| | || || | ||| | | |||| ||| || || | || || || Sbjct 2083061 CCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGA 2083002 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 |||| || || || ||||| ||||||| || || || | |||| Sbjct 2083001 GCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCAT 2082952 >seq2977 Length=7416971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | ||||||| || || || | ||| |||||||| || ||||| ||||| Sbjct 6479984 CATGACTCCGAATCTTTGATACTCTGCCACCCGTTTCTCAAAGAAGTTGGTTTTCCCCTC 6480043 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 | ||| ||| | ||||| || ||||||||||||| Sbjct 6480044 GAGTGAGATAGACTCCATGAAGTCAAATGGATTTT 6480078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083821290200