Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3177 167 2e-35
seq2554 111 1e-18
seq2921 87.8 1e-11
>seq3177
Length=5359858
Score = 167 bits (184), Expect = 2e-35
Identities = 444/673 (66%), Gaps = 4/673 (1%)
Strand=Plus/Plus
Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971
|| ||||| || || || || | || || | || || | ||||| | | ||||| |
Sbjct 5197319 ACAGCTTGTGAGAGGGCAAAGAGGACCT-TATCCTCCAGCACTCAGGCAAGCATTGAGAT 5197377
Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031
|| || | |||||||||||||||| | | || | || | ||||| ||||| ||
Sbjct 5197378 CGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTTTTGAGGA 5197437
Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091
| || ||||| || || |||| ||| ||||| || ||| | ||| |
Sbjct 5197438 GCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTTGAGAAAGCCCTGCAGGATGC 5197497
Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151
||| | |||||||||| | ||||||||||| || |||||||| || |||||||||||
Sbjct 5197498 CAAGCTGGATAAATCCAGGATTCATGAAATTGTCCTGGTTGGTGGCTCCACAAGAATTCC 5197557
Query 552152 TAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210
||||| | | | ||| || ||| ||| ||||| ||| | | || | || |||
Sbjct 5197558 CAAAATCCAGAAGCTCTTACAGGACTTCTTT-AATGGCAAAGACCTGAACAAGAGCATTA 5197616
Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270
| |||||||| ||||| ||||| ||||| ||| | |||||||| || || || | |
Sbjct 5197617 ACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCCATCCTCATGGGCGACA 5197676
Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330
| || || | ||| || | | || | ||||| |||| || ||||| || | |
Sbjct 5197677 CCTCAGAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGTCTCTGGGCATTG 5197736
Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390
|||| | || ||| ||||||| ||| || | |||| || || || || ||
Sbjct 5197737 AAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAATCCCCACAAAGC 5197796
Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450
| ||| | || || || || |||||||| || | | ||| ||||| | ||||
Sbjct 5197797 AGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGTGTATTGATTCAGGTATTTG 5197856
Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510
|||| || ||| | || ||| || || | || || | ||| | | |||||
Sbjct 5197857 AAGGCGAGAGAGCCATGACCAAATGCAACAACCTTCTGGGCAAATTTGACCTCACAGGTA 5197916
Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570
| ||||| ||||| || || || || || || || || || || || || |||||||| |
Sbjct 5197917 TCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGACATTGATGCCAACG 5197976
Query 552571 GAATTTTGAATGT 552583
| ||| | |||||
Sbjct 5197977 GCATTCTAAATGT 5197989
>seq2554
Length=10198541
Score = 111 bits (122), Expect = 1e-18
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
||||||| || || || ||||| || || || || || || |||||||| || |||||||
Sbjct 359267 ATGCAGTCATCACAGTTCCAGCTTACTTCAACGATTCCCAGCGTCAAGCCACCAAAGATG 359326
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| || |||| |||||||| || || || |||||||| ||||||||||| ||
Sbjct 359327 CTGGGGCCATCTCTGGCCTTAATGTACTGCGCATCATCAATGAGCCTACTGCTGCAGCTA 359386
Query 550518 TTGCATATGGACTTGATAA 550536
|||| |||||||| || ||
Sbjct 359387 TTGCTTATGGACTGGACAA 359405
>seq2921
Length=406354
Score = 87.8 bits (96), Expect = 1e-11
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036
|||||||| | ||| | ||||| ||| | || ||||| || |||||||||||
Sbjct 233823 ATGTCAAAGGGACCAGCAGTTGGTATTGATCTTGGGACCACCTACTCCTGTGTTGGTGTG 233882
Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096
| || |||| ||||||||||||||||||||||| || || ||||| || || || |
Sbjct 233883 TTCCAGCATGGCAAAGTTGAAATTATTGCCAATGACCAGGGCAACAGGACCACACCCAGT 233942
Query 550097 TATGTTTCTTTCACGGAAACTGA 550119
||||| | ||||| || || ||
Sbjct 233943 TATGTGGCCTTCACAGATACCGA 233965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029107995566950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |