Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3177 167 2e-35 seq2554 111 1e-18 seq2921 87.8 1e-11 >seq3177 Length=5359858 Score = 167 bits (184), Expect = 2e-35 Identities = 444/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || ||||| || || || || | || || | || || | ||||| | | ||||| | Sbjct 5197319 ACAGCTTGTGAGAGGGCAAAGAGGACCT-TATCCTCCAGCACTCAGGCAAGCATTGAGAT 5197377 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || || | |||||||||||||||| | | || | || | ||||| ||||| || Sbjct 5197378 CGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTTTTGAGGA 5197437 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || ||||| || || |||| ||| ||||| || ||| | ||| | Sbjct 5197438 GCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTTGAGAAAGCCCTGCAGGATGC 5197497 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | |||||||||| | ||||||||||| || |||||||| || ||||||||||| Sbjct 5197498 CAAGCTGGATAAATCCAGGATTCATGAAATTGTCCTGGTTGGTGGCTCCACAAGAATTCC 5197557 Query 552152 TAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 ||||| | | | ||| || ||| ||| ||||| ||| | | || | || ||| Sbjct 5197558 CAAAATCCAGAAGCTCTTACAGGACTTCTTT-AATGGCAAAGACCTGAACAAGAGCATTA 5197616 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||| ||||| ||||| ||||| ||| | |||||||| || || || | | Sbjct 5197617 ACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCCATCCTCATGGGCGACA 5197676 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 | || || | ||| || | | || | ||||| |||| || ||||| || | | Sbjct 5197677 CCTCAGAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGTCTCTGGGCATTG 5197736 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 |||| | || ||| ||||||| ||| || | |||| || || || || || Sbjct 5197737 AAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAATCCCCACAAAGC 5197796 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 | ||| | || || || || |||||||| || | | ||| ||||| | |||| Sbjct 5197797 AGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGTGTATTGATTCAGGTATTTG 5197856 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 |||| || ||| | || ||| || || | || || | ||| | | ||||| Sbjct 5197857 AAGGCGAGAGAGCCATGACCAAATGCAACAACCTTCTGGGCAAATTTGACCTCACAGGTA 5197916 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | ||||| ||||| || || || || || || || || || || || || |||||||| | Sbjct 5197917 TCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGACATTGATGCCAACG 5197976 Query 552571 GAATTTTGAATGT 552583 | ||| | ||||| Sbjct 5197977 GCATTCTAAATGT 5197989 >seq2554 Length=10198541 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || ||||| || || || || || || |||||||| || ||||||| Sbjct 359267 ATGCAGTCATCACAGTTCCAGCTTACTTCAACGATTCCCAGCGTCAAGCCACCAAAGATG 359326 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| |||||||| || || || |||||||| ||||||||||| || Sbjct 359327 CTGGGGCCATCTCTGGCCTTAATGTACTGCGCATCATCAATGAGCCTACTGCTGCAGCTA 359386 Query 550518 TTGCATATGGACTTGATAA 550536 |||| |||||||| || || Sbjct 359387 TTGCTTATGGACTGGACAA 359405 >seq2921 Length=406354 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | ||||| ||| | || ||||| || ||||||||||| Sbjct 233823 ATGTCAAAGGGACCAGCAGTTGGTATTGATCTTGGGACCACCTACTCCTGTGTTGGTGTG 233882 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||||||||||||||||||||| || || ||||| || || || | Sbjct 233883 TTCCAGCATGGCAAAGTTGAAATTATTGCCAATGACCAGGGCAACAGGACCACACCCAGT 233942 Query 550097 TATGTTTCTTTCACGGAAACTGA 550119 ||||| | ||||| || || || Sbjct 233943 TATGTGGCCTTCACAGATACCGA 233965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029107995566950