Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3478 253 4e-62 seq3467 132 9e-26 seq2977 114 2e-20 >seq3478 Length=3494213 Score = 253 bits (280), Expect = 4e-62 Identities = 1042/1625 (64%), Gaps = 61/1625 (4%) Strand=Plus/Minus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 ||||| ||||| | | |||| | | |||||| || |||| || ||||||||| | Sbjct 2084536 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTC 2084477 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || | |||| || ||| ||| || | || || || ||||||||||||| | | Sbjct 2084476 AGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTG 2084417 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| | | |||||| ||||||||||||||||||||| || ||| | Sbjct 2084416 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2084357 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTT- 221274 || |||||||| || | || |||||| ||||| | || || || | ||| | ||| Sbjct 2084356 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCC--ATGT-TTGGCGATCTTC 2084300 Query 221275 TC--TCAGCGTGTTCCAGTCACAGTGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNN 221332 || ||||| |||||||| || |||||| Sbjct 2084299 TCCTTCAGCAGCTTCCAGTCCCA---------CAGGTCCGTTGGCGTCTTCTCCCACATG 2084249 Query 221333 NNNNNNNNNNNNNNNNNNTTAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTAC 221392 ||| |||||| || ||||||| ||| |||| ||| | Sbjct 2084248 TCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGC 2084189 Query 221393 AGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCAT 221451 ||||| | |||| | || || | || || | || || |||||||||||| Sbjct 2084188 TCGGCGGCCAGCTCGCAGCTC-GCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTG 2084130 Query 221452 CTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGAAGGGCATA-CGCAGCATC-TGAAAGAC 221508 ||||||| | ||| |||||||| | | || || ||| |||| | |||||| | Sbjct 2084129 GATGTTGAG-CAGTTGAGCCTCGGG-GCTTTCAAAGGGATAACGCATAAGGATGAAAG-C 2084073 Query 221509 GTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-- 221566 || |||| |||||| || ||||| || || |||||||| | | |||| || | || Sbjct 2084072 ATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGA--CCTCCTG 2084015 Query 221567 GCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACT 221626 |||||| ||| || || |||||| |||||| | ||||| | |||| |||| Sbjct 2084014 GCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCC------TGAC- 2083962 Query 221627 TTAACCACCTCGGTCA--GCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGG 221684 || || | ||||| | | | | || || || |||| || |||| Sbjct 2083961 --AATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGC--TC----AGGG 2083910 Query 221685 GTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGT 221744 || | | | | || || || || |||||| || || || ||||||||||||||| Sbjct 2083909 GTGACGTACATG--TTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGC 2083852 Query 221745 TGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGT 221804 | || |||| | ||| || || ||||||||||||||||||||||| ||||| | | | Sbjct 2083851 TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCT 2083792 Query 221805 GATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCT 221864 | || ||| | ||| || || ||||||| ||| | || || || || || Sbjct 2083791 GGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCT 2083732 Query 221865 GAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCC 221923 | | | | | || | ||| || | ||| || ||||| | ||| || ||| Sbjct 2083731 GCGACTCGATGATTGCATACCATAGCTG-CTGAGCCTTCACCACACGCTTCACCCTCCCC 2083673 Query 221924 TCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGG 221983 || ||| ||||| | ||| ||||| ||||||| || || | ||| ||||| Sbjct 2083672 TC---CTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGC 2083616 Query 221984 CCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATG 222043 || || || ||| ||||||||||| ||||| | ||||| | |||| || |||| Sbjct 2083615 CCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATG 2083556 Query 222044 AAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCG 222103 |||||||| ||||||||||| || | || || || |||| |||||||||||| || Sbjct 2083555 AAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCC 2083496 Query 222104 TTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACG 222163 |||| ||| |||| |||| || ||||| | || |||||| |||||||| || | | Sbjct 2083495 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATG 2083436 Query 222164 GCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAG 222223 || | |||||||||| |||||||| |||||||| || | | | |||| | Sbjct 2083435 GCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAA 2083376 Query 222224 ATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA-CGCACC 222282 | | | | || || || |||||||| | ||||||||||| ||||| | | || Sbjct 2083375 ACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCC 2083316 Query 222283 GCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGC 222342 | || || | | ||| | | || ||| || || || || ||| ||||| | ||| Sbjct 2083315 G-TGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGC 2083257 Query 222343 GCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAA 222402 ||| ||| || ||||| ||| ||||| || ||| ||||| | | ||||| || Sbjct 2083256 GCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAA 2083197 Query 222403 ACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGT 222462 || |||| ||| | || ||| | || || || || || || |||||| || Sbjct 2083196 GCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGT 2083137 Query 222463 AAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTG 222522 || | | |||| ||| | ||| ||||| | |||| |||| | |||||| Sbjct 2083136 GAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTG 2083077 Query 222523 AATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT---CCACAGGACCCTTGGA 222579 || || || |||||| ||||| ||| || | || | || || || || Sbjct 2083076 GATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATT-GA 2083018 Query 222580 GCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTG-AGGTCAAAGT 222638 || |||||||| || |||||||||||||| |||||| ||||| ||| ||| | Sbjct 2083017 TCT--TTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAA-T 2082961 Query 222639 CTCTG 222643 ||||| Sbjct 2082960 CTCTG 2082956 >seq3467 Length=3272559 Score = 132 bits (146), Expect = 9e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 2318159 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 2318218 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 2318219 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 2318278 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 2318279 ATCAGCAGAGACGAGG 2318294 Score = 132 bits (146), Expect = 9e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 2328791 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 2328732 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 2328731 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 2328672 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 2328671 ATCAGCAGAGACGAGG 2328656 >seq2977 Length=7416971 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| | || || ||||| |||||||| |||||||| ||| ||||| ||||| Sbjct 6481990 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 6481931 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| |||| ||||| || || || |||||||||||| Sbjct 6481930 GCTATCTACTGGCTGAAGAAGAGGGGGTTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 6481871 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||||||||||| Sbjct 6481870 ATTAGCAGGGACGAGG 6481855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928803524459200