Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3177 194 1e-43 seq2554 111 1e-18 seq303 95.1 8e-14 seq2925 87.8 1e-11 >seq3177 Length=5359858 Score = 194 bits (214), Expect = 1e-43 Identities = 375/546 (69%), Gaps = 8/546 (1%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| |||||| | || || || || |||||| | |||| || |||| ||||| Sbjct 5196545 ATTGGCATTGATCTGGGCACCACCTATTCTTGTGTTGGGGTTTTCCAGCATGGCAAAGTT 5196604 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| || || || |||||||| || ||| ||||| ||||||| || Sbjct 5196605 GAGATCATTGCCAACGATCAGGGCAATAGAACCACTCCAAGCTATGTGGCTTTTACCGAC 5196664 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || ||| ||||||||||||||||| || | |||| |||| || || ||| || Sbjct 5196665 ACAGAAAGGCTTATTGGAGATGCTGCCAAGAACCAAGTTGCAATGAACCCCAATAACACA 5196724 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATCTGA 474570 || |||||||| ||| | ||||||| | || ||| |||| ||| | || || || || Sbjct 5196725 ATCTTTGATGCCAAACGGCTGATTGGAAGAAAGTTTAATGA-CCCAGTCGTACAGTCCGA 5196783 Query 474571 TATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCA 474628 ||| | |||||||| |||||||| | | | ||| || || | | || | | Sbjct 5196784 CATGAAGCTCTGGCCTTTCAAGGTGATTGACGATAATGGAAAGCCCAAAGTCCAGGTGGA 5196843 Query 474629 ATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 ||||| ||| || || || ||| | || || ||||||| || ||||| | | Sbjct 5196844 ATACA--AAGGGGAGACCAAGGCATTCTATCCTGAGGAAATTTCCTCCATGGTCCTGGTT 5196901 Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 |||||||| | | || ||| | || || |||||| || | | ||||| || || Sbjct 5196902 AAAATGAAGGAGATAGCTGAG-GCCTACCTGGGACAAAGGGTGTCAAACGCAGTCATCAC 5196960 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || ||||| ||||| || || || || | ||||| || || ||||| || || | Sbjct 5196961 AGTGCCAGCTTATTTCAACGACTCCCAGAGACAAGCTACCAAGGATGCTGGGGTGATCTC 5197020 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || || |||||| | | || |||||||| || |||||||| || |||| ||||| || Sbjct 5197021 TGGACTAAATGTTCTGAGGATCATTAATGAGCCCACAGCAGCAGCCATTGCATATGGCCT 5197080 Query 474868 TGATAA 474873 ||||| Sbjct 5197081 GGATAA 5197086 Score = 149 bits (164), Expect = 4e-30 Identities = 418/627 (67%), Gaps = 16/627 (3%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| | || ||||| ||||| |||||||||| | | || || |||||||| | Sbjct 5197371 TTGAGATCGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTT 5197430 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT-C 475666 |||| || | || ||||| || || |||| ||| || ||||| ||| || | Sbjct 5197431 TTGAGGAGCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTTGAGAAAGCCCTGC 5197490 Query 475667 AGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 || ||| | || || || ||||| || | | ||||||||||| || || || || || || Sbjct 5197491 AG-GATGCCAAGCTGGATAAATC-CAGGATTCATGAAATTGTCCTGGTTGGTGGCTCCAC 5197548 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATG 475784 ||||||||| ||||| |||| ||| || | | |||||||| ||| | | || Sbjct 5197549 AAGAATTCCCAAAAT-CCAGAAGCTCTTACAGGACTTCTTTAATGGCAAAGACCTGAACA 5197607 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTA 475843 | || | || || ||||||||||| || || || || || ||||||||||| || | | Sbjct 5197608 AGAGCATTAACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCCATCCTCA 5197667 Query 475844 TCAG-GTCA-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 | | | || ||| ||||| | | || | | || | || || |||| || | Sbjct 5197668 TGGGCGACACCTCA---GAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGT 5197724 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || ||||||| | || || ||||||| ||| || | |||| || | | Sbjct 5197725 CTCTGGGCATTGAAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAA 5197784 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||| | | || ||||| || || ||||| || || |||| Sbjct 5197785 TCCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGTGTATT 5197842 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || | |||||||| || ||| | || ||| || ||| || || | || Sbjct 5197843 GATTCAGGTATTTGAAGGCGAGAGAGCCATGACCAAATGCAACAACCTTCTGGGCAAATT 5197902 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||| ||||| |||||| |||| ||||| || || || || || ||||| Sbjct 5197903 TGACCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGA 5197962 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 |||||||| || || ||||| ||||| Sbjct 5197963 CATTGATGCCAACGGCATTCTAAATGT 5197989 >seq2554 Length=10198541 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| ||| | ||||| || ||||||| ||||| | ||| | || || Sbjct 360486 TGAAGGTGAGAGAGCCATGACTAAGGACAATAACATCCTTGGGAAGTTTGAACTGACTGG 360545 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||| ||||| |||||||| || || || || ||||| ||||||||||| Sbjct 360546 TATTCCACCTGCTCCAAGAGGGGTTCCTCAGATCGAGGTGACCTTTGACATTGATGCAAA 360605 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 360606 TGGCATTCTCAATGTGTCTGC 360626 >seq303 Length=4018286 Score = 95.1 bits (104), Expect = 8e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||||||||| | || ||||| ||| ||||||| |||| || |||| ||| Sbjct 505899 GCAGTTGGTATTGACCTGGGCACTACCTACTCCTGTGTAGGAGTTTTTCAGCATGGCAAA 505958 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || || || ||||| |||||| | || ||| Sbjct 505959 GTGGAAATCATTGCCAATGACCAGGGAAACAGGACTACACCCAGCTATGTTGCATTCACT 506018 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || || || || ||||| ||||| || || | |||| Sbjct 506019 GACACAGAGAGGCTGATTGGGGATGCAGCCAAGAACCAAG 506058 >seq2925 Length=327652 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || |||||||||||||| || | ||| || || || || || | || || Sbjct 138063 GTGGAGATTATTGCCAATGACCAGGGAAGCCGAATCACCCCCTCCTACGTGGCCTTCACC 138004 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 |||| ||| | ||| ||||| |||||||| || |||| |||| | ||||| |||| Sbjct 138003 AGTGAAGGTGAGCGTCTGATTGGTGATGCTGCCAAGAATCA-GCTGACCTCTAACCCTGA 137945 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || |||||||||||||| || || |||||||||| Sbjct 137944 GAACACTATTTTTGATGCAAAGAGGCTGATTGGTCG 137909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268026708801140