Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2944 176 6e-38
seq1379 176 6e-38
seq513 161 1e-33
seq2908 141 1e-27
seq2388 141 1e-27
seq3478 125 9e-23
seq3467 95.1 1e-13
seq413 95.1 1e-13
seq824 87.8 2e-11
seq2977 86.0 8e-11
seq480 86.0 8e-11
>seq2944
Length=6283502
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||||||||||||||||||||||| | | | ||
Sbjct 6083367 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 6083426
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| |||||| | | ||||||| |||| |
Sbjct 6083427 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGA 6083486
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 6083487 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 6083546
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 6083547 GCACCTGCTTCAGCACCTTGTA 6083568
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||||||||||||||||||||||| | | | ||
Sbjct 6106663 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 6106722
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| |||||| | | ||||||| |||| |
Sbjct 6106723 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGA 6106782
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 6106783 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 6106842
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 6106843 GCACCTGCTTCAGCACCTTGTA 6106864
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||||||||||||||||||||||| | | | ||
Sbjct 6112845 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 6112904
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| |||||| | | ||||||| |||| |
Sbjct 6112905 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGA 6112964
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 6112965 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 6113024
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 6113025 GCACCTGCTTCAGCACCTTGTA 6113046
>seq1379
Length=720876
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||||||||||||||||||||||| | | | ||
Sbjct 156608 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 156549
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| |||||| | | ||||||| |||| |
Sbjct 156548 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGA 156489
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 156488 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 156429
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 156428 GCACCTGCTTCAGCACCTTGTA 156407
>seq513
Length=2262107
Score = 161 bits (178), Expect = 1e-33
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| | | | |||||| || |||||||||||||| | | | ||
Sbjct 730865 GCTTGGCCAGCTCACCGGGGAGAAGCAGGCGAACTGCGGTCTGGATCTCCCTGGAGGTGA 730924
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| |||||| | | ||||||| |||| |
Sbjct 730925 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGA 730984
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 730985 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 731044
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 731045 GGACCTGCTTCAGCACCTTGTA 731066
Score = 134 bits (148), Expect = 2e-25
Identities = 151/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| | | | |||||| || |||||||||||||| | | | ||
Sbjct 696224 GCTTGGCCAGCTCACCGGGGAGAAGCAGGCGAACTGCGGTCTGGATCTCCCTGGAGGTGA 696165
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| ||| || | | |||| || |||| |
Sbjct 696164 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCTTCAGCGGCGATACGCTCGAAGA 696105
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| ||||| ||||||| ||| | ||| |||||||| ||||||||
Sbjct 696104 TGTCATTGACGAACGAATTCATGATGCTCATGGCCTTAGACGAGATGCCGGTGTCGGGGT 696045
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 696044 GGACCTGCTTCAGCACCTTGTA 696023
>seq2908
Length=213623
Score = 141 bits (156), Expect = 1e-27
Identities = 154/203 (76%), Gaps = 1/203 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| | | | |||||||| |||||||||||||| | | ||
Sbjct 4106 GCTTGGCCAGCTCACCGGGGAGAAGGAGGCGCACTGCGGTCTGGATCTCCCTGGAAGTGA 4165
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| || ||||||| ||||||| |||| |
Sbjct 4166 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGAGATGCCTCGGCTGCGATGCGCTCGAAGA 4225
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGAC-TTGTTGGAGATGCCCACGTCGGGG 1254521
|||||||||||||||||||||||| ||| | | ||| |||||| || |||||||
Sbjct 4226 TGTCGTTGACAAACGAGTTCATGATGCTCATGGCCTTTGGAGGAGATCCCGGTGTCGGGG 4285
Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544
|| |||||||| |||||||||||
Sbjct 4286 TGGACCTGCTTCAGCACCTTGTA 4308
>seq2388
Length=499105
Score = 141 bits (156), Expect = 1e-27
Identities = 154/203 (76%), Gaps = 1/203 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| | | | |||||||| |||||||||||||| | | ||
Sbjct 451870 GCTTGGCCAGCTCACCGGGGAGAAGGAGGCGCACTGCGGTCTGGATCTCCCTGGAAGTGA 451929
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| || ||||||| ||||||| |||| |
Sbjct 451930 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGAGATGCCTCGGCTGCGATGCGCTCGAAGA 451989
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGAC-TTGTTGGAGATGCCCACGTCGGGG 1254521
|||||||||||||||||||||||| ||| | | ||| |||||| || |||||||
Sbjct 451990 TGTCGTTGACAAACGAGTTCATGATGCTCATGGCCTTTGGAGGAGATCCCGGTGTCGGGG 452049
Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544
|| |||||||| |||||||||||
Sbjct 452050 TGGACCTGCTTCAGCACCTTGTA 452072
>seq3478
Length=3494213
Score = 125 bits (138), Expect = 9e-23
Identities = 275/421 (65%), Gaps = 0/421 (0%)
Strand=Plus/Minus
Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221
||| |||||| || ||||| |||||| || | | || ||||| ||||||||||||
Sbjct 2083845 ACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGC 2083786
Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281
| || |||| ||| || |||| || |||||| |||| ||||| || |||||| |
Sbjct 2083785 TCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACT 2083726
Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNN 1628341
||| ||| || |||| | ||| | || ||| ||| | | | | ||||
Sbjct 2083725 CGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCT 2083666
Query 1628342 NNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCT 1628401
||||| || | || ||||||| | ||| ||||| |
Sbjct 2083665 CATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGT 2083606
Query 1628402 CGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCAC 1628461
||| |||||| | || |||||||| | | || || | || ||| |||||||||
Sbjct 2083605 CGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAG 2083546
Query 1628462 ACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 1628521
||||||| ||||| || ||||| | || || | ||||||||| || |||||| |
Sbjct 2083545 GGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCT 2083486
Query 1628522 TGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 1628581
| || || || |||| | | ||| |||||| ||||||||||| ||| |||||||
Sbjct 2083485 TCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGC 2083426
Query 1628582 C 1628582
|
Sbjct 2083425 C 2083425
Score = 120 bits (132), Expect = 4e-21
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354
|||||||||| | | | ||||| |||| ||||||| ||||||| | ||| || |
Sbjct 2084496 TCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCC 2084437
Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414
|||||||||| ||||| |||||||||||| | ||| | ||||| | |||| ||||||
Sbjct 2084436 CCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGC 2084377
Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCAT 1627445
|||||||||| | || | ||||||||||||
Sbjct 2084376 CCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 2084346
>seq3467
Length=3272559
Score = 95.1 bits (104), Expect = 1e-13
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242
||||| | ||||| | |||||| |||| ||||||||||| ||||| | ||||||
Sbjct 2318292 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 2318233
Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
||||| ||||||||| ||| |||||||| ||||| ||||| || |||||||||
Sbjct 2318232 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAG 2318176
Score = 95.1 bits (104), Expect = 1e-13
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242
||||| | ||||| | |||||| |||| ||||||||||| ||||| | ||||||
Sbjct 2328658 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 2328717
Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
||||| ||||||||| ||| |||||||| ||||| ||||| || |||||||||
Sbjct 2328718 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAG 2328774
>seq413
Length=2963037
Score = 95.1 bits (104), Expect = 1e-13
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||| ||||| ||||||||||| |||||||||| || ||| | |||||
Sbjct 407516 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGCCACTTGGCTCTGCTCTGTGACAC 407575
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161
|||| |||||| || || ||||| |||| || |||||| ||||||||
Sbjct 407576 CATGACCTGCCGAGGTCACCTGATGGCCATCACCCGTCACGGCATCAACCGC 407627
>seq824
Length=1399598
Score = 87.8 bits (96), Expect = 2e-11
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521
||||||||||||||||||||||||| ||| | |||| |||||| || |||||||
Sbjct 45036 ATGTCGTTGACAAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATCCCGGTGTCGGGG 45095
Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544
|| |||||||| |||||||||||
Sbjct 45096 TGGACCTGCTTCAGCACCTTGTA 45118
>seq2977
Length=7416971
Score = 86.0 bits (94), Expect = 8e-11
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 869829 CCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCT 869888
|||||||||| ||||||||| ||||||| ||||| ||||||||||| ||| | |
Sbjct 6484061 CCACCTCCTCCACGGTCCAGAAAGAGGCCTGGGCCTGTTTGTACATCTTCCAGATGTCTC 6484120
Query 869889 GGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
|||| |||| || || | |||||| || ||||||| || || | ||| |||||
Sbjct 6484121 GGTACTGGATGGGAAAAATGACAAACCGCCTGGGGTTCTCTCGGAGCAGAGGTTC 6484175
>seq480
Length=3340727
Score = 86.0 bits (94), Expect = 8e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||||||||||| | |||||||| ||| | ||| | |||||| | |||||||||
Sbjct 1103487 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 1103428
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295
|||||||| ||||| | || ||||||||| | ||||| || ||||||||
Sbjct 1103427 ATGATCAAAGGCAAAACCCCAGAGGAGATCAGGAAGACTTTCAACATCAA 1103378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106847460051935
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