Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3511 89.7 9e-13 seq92 87.8 3e-12 seq1446 84.2 4e-11 >seq3511 Length=2785928 Score = 89.7 bits (98), Expect = 9e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 58377 GAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCA 58436 |||| | ||| |||| | || || ||||| || || || | || || |||||||||| Sbjct 696756 GAGCTCTGTGGAGGTATTTCATCTCCAAAGGCATTGAGTATCTGGACACTGTGTTTTTCA 696697 Query 58437 TACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGT 58496 | || |||||||| ||||| || || | ||| || ||||| || ||||||| | |||| Sbjct 696696 TCCTGAGGAAAAAATTTAACCAGGTCACCTTCCTGCACGTCTACCATCATTGCTCCATGT 696637 Query 58497 TTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | || | | ||| | || || || ||| | |||||||| ||| Sbjct 696636 TCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 696593 >seq92 Length=4710119 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 ||||||| || | ||||||||||| || || ||||| | || | | | || || || Sbjct 4561672 GATAGCCTCGGCTCTTTGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGACACTGT 4561731 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 ||||||||||| ||||| ||||| || || || ||||| || ||||| || ||||| | Sbjct 4561732 CTTTTTCATACTGAGGAAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTG 4561791 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || ||||| | | | ||| | || || |||||| || | || || || Sbjct 4561792 CACCATGTTCATCCTCTGGTGGATTGGAATCAAATGGGTTCCCGGTGGACA 4561842 >seq1446 Length=1813966 Score = 84.2 bits (92), Expect = 4e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 58377 GAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCA 58436 |||| | |||||||| | || || || || || || || | || || |||||||||| Sbjct 709163 GAGCTCTGTGGTGGTATTTCATCTCCAAGGGCATTGAGTATCTGGACACTGTGTTTTTCA 709104 Query 58437 TACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGT 58496 | | |||||||| ||||| || || | ||| || ||||| || ||||||| | |||| Sbjct 709103 TCTTGAGGAAAAAATTTAACCAGGTCACCTTCCTTCACGTCTACCATCATTGCTCCATGT 709044 Query 58497 TTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | || | | ||| | || || || ||| | |||||||| ||| Sbjct 709043 TCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 709000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903371054664800