Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2944 194 2e-43 seq1379 190 3e-42 seq2908 176 6e-38 seq2388 176 6e-38 seq513 167 3e-35 seq3478 120 4e-21 seq3467 89.7 7e-12 >seq2944 Length=6283502 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 6113046 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 6112993 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 6112992 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 6112933 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 6112932 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 6112873 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 6112872 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 6112824 Score = 190 bits (210), Expect = 3e-42 Identities = 179/227 (79%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 6083568 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 6083515 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 6083514 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 6083455 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 6083454 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 6083395 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 6083394 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 6083348 Score = 190 bits (210), Expect = 3e-42 Identities = 179/227 (79%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 6106864 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 6106811 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 6106810 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 6106751 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 6106750 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 6106691 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 6106690 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 6106644 >seq1379 Length=720876 Score = 190 bits (210), Expect = 3e-42 Identities = 179/227 (79%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 156407 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 156460 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 156461 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 156520 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 156521 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 156580 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 156581 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 156627 >seq2908 Length=213623 Score = 176 bits (194), Expect = 6e-38 Identities = 176/227 (78%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| || ||||| Sbjct 4308 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA--AGGCCATG 4254 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| ||||||| |||| Sbjct 4253 AGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCAGCCGAGGCATCTCGC 4194 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | |||||||||||||| |||||| Sbjct 4193 CTGGCCCACTACAACAAGCGCTCCACCATCACTTCCAGGGAGATCCAGACCGCAGTGCGC 4134 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | | | ||| || ||||||| ||||||||| || |||||||| Sbjct 4133 CTCCTTCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCAC 4087 >seq2388 Length=499105 Score = 176 bits (194), Expect = 6e-38 Identities = 176/227 (78%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| || ||||| Sbjct 452072 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA--AGGCCATG 452018 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| ||||||| |||| Sbjct 452017 AGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCAGCCGAGGCATCTCGC 451958 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | |||||||||||||| |||||| Sbjct 451957 CTGGCCCACTACAACAAGCGCTCCACCATCACTTCCAGGGAGATCCAGACCGCAGTGCGC 451898 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | | | ||| || ||||||| ||||||||| || |||||||| Sbjct 451897 CTCCTTCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCAC 451851 >seq513 Length=2262107 Score = 167 bits (184), Expect = 3e-35 Identities = 174/227 (77%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 731066 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 731013 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 731012 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 730953 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| || ||| Sbjct 730952 CTGGCCCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTTCGC 730893 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | | | ||| || ||||||| |||||| || || |||||||| Sbjct 730892 CTGCTTCTCCCCGGTGAGCTGGCCAAGCACGCAGTGTCTGAGGGCAC 730846 Score = 140 bits (154), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || ||| ||||| Sbjct 696023 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTCTAAGGCCATG 696076 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| ||||| ||||| ||||| |||| || |||| | | || ||| ||| Sbjct 696077 AGCATCATGAATTCGTTCGTCAATGACATCTTCGAGCGTATCGCCGCTGAAGCCTCCCGC 696136 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| || ||| Sbjct 696137 CTGGCCCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTTCGC 696196 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | | | ||| || ||||||| |||||| || || |||||||| Sbjct 696197 CTGCTTCTCCCCGGTGAGCTGGCCAAGCACGCAGTGTCTGAGGGCAC 696243 >seq3478 Length=3494213 Score = 120 bits (132), Expect = 4e-21 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 262915 CATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATC 262974 |||||| || | ||| |||| || | | |||||||||||| | || | |||||| Sbjct 2084313 CATGGCGTGAGGAACAGCCTGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATC 2084372 Query 262975 CTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTC 263034 |||||||||| |||| | |||||| | ||| |||||||||||||| ||||| |||||| Sbjct 2084373 CTGGGCAACAACGAGTCCATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTC 2084432 Query 263035 TCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTG 263094 ||||| || ||| | ||||||| ||||||| |||| | || | | | |||||| Sbjct 2084433 TCGGGGGAGTTTCAGATCGTCAACCCCCACCTGCTCAAAGACCTGACAGAGAGGGGCCTG 2084492 Query 263095 TGGA 263098 |||| Sbjct 2084493 TGGA 2084496 Score = 104 bits (114), Expect = 3e-16 Identities = 198/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | || || ||||| ||||| || || | | Sbjct 2083120 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGC 2083179 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 ||||| || ||||| ||| | | |||||||| || |||||||| ||||| | Sbjct 2083180 CGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACG 2083239 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 ||||||| ||||| ||||| ||||||||||| | || || || || || | || | Sbjct 2083240 ACACGCTAAAGCATTGCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGTGGCAG--- 2083296 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | || |||| |||| | || |||||||||||| |||||||| Sbjct 2083297 -TCAGCTGCATTAGATCCACGGGGAGCTACATCGCCGGCACCAACGGCTGTTCCAACGGG 2083355 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || || ||| | | |||| ||| |||| ||||| || || || ||| Sbjct 2083356 CTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAG 2083406 Score = 89.7 bits (98), Expect = 7e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| || || ||| | | || | || ||||| ||||| |||||||||||| Sbjct 2083704 CAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTAC 2083763 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 || || ||| |||| || |||||||||||||| |||||||||| | || | ||| Sbjct 2083764 AAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA-AGTGCAGCAA 2083822 Query 262210 CCTGTGCACCGAGATCGTCCAGT 262232 ||| ||||| || |||||| ||| Sbjct 2083823 CCTCTGCACGGAAATCGTCGAGT 2083845 >seq3467 Length=3272559 Score = 89.7 bits (98), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| | || || || | | ||||| || | || ||||| |||||||||||| Sbjct 2317755 CGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGATCGCC 2317814 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || | ||| || ||||||||||| ||| |||||||||| Sbjct 2317815 ATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGGACCC 2317873 Score = 89.7 bits (98), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| | || || || | | ||||| || | || ||||| |||||||||||| Sbjct 2329195 CGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGATCGCC 2329136 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || | ||| || ||||||||||| ||| |||||||||| Sbjct 2329135 ATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGGACCC 2329077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177468313715910