Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1999 96.9 3e-15 seq1822 95.1 1e-14 seq3011 93.3 3e-14 >seq1999 Length=747287 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 87331 GCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAAAC 87390 ||||||| ||| || |||||| | || || ||||| || ||| |||| || |||| ||| Sbjct 491023 GCTCCCATTTTGCTGAAATCTCTTTTGGACTGAAAGGTGTAGGCTGTTAATACAGCGAAC 490964 Query 87391 ACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGT 87443 |||||||| || | ||| | | ||| ||||| |||||||| ||||||||||| Sbjct 490963 ACAGCACAGGTGAGAAACAAAGCTTGCAGTATTGTGGAGTAATCATAGAAGGT 490911 >seq1822 Length=1264002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 ||||||| || |||||||||||| |||||| |||||||||||||| ||| | || | Sbjct 234945 CTCTGACGAATGCCCAGGCATCTCGCTCTGAGGCAAACTTCTTAAAGGAGGCGGACGGAA 234886 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| |||||||||||||| || |||| Sbjct 234885 ATTTGTCCACTTGGCTCTTACACTCGTCCC 234856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||| || ||| || |||||| |||| |||||| || |||||| Sbjct 237886 CCAGACCACCTCCACCTGTCCATTCAGCCTGTCCAGTTTCACAAAGTCGTCTTTGTTGGT 237827 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 || |||||| ||| | || ||||||||||||| ||||||||||||| ||||| | | Sbjct 237826 AATCTGACC-TCCAGATTTCAACCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGCTGG 237768 Query 77430 TCACACC 77436 ||||||| Sbjct 237767 TCACACC 237761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 77234 GGCTTTGTCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCG 77293 ||||| | |||||| |||| || ||||| |||||||||||| |||||| |||| || ||| Sbjct 239474 GGCTTCGCCGCTCCTTCTCTTGACAGCCTGTCGGCCTCCTCGTTGCCTCTGTAGCCGGCG 239415 Query 77294 TGTCCTGGGATGTGCA 77309 || ||||| ||||||| Sbjct 239414 TGACCTGGAATGTGCA 239399 >seq3011 Length=8691009 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| |||| || || || | || ||||| ||||| ||| | || || ||||| Sbjct 8387783 GATGGCGCTGCCCCCCTGCCACGCACTCTGCCAGTTCTACGTGTGCGACGGCGAGCTGTC 8387842 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 ||||| |||| || | |||| ||| |||||| |||| || || || ||||| || || Sbjct 8387843 GTGTCAGCTGTACCAGCGCTCAGCTGATATGGGATTAGGAGTGCCTTTCAACATCGCCAG 8387902 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || || || || |||||||||||| |||| Sbjct 8387903 CTATTCACTTCTTACCTACATGATTGCACACATTAC 8387938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438779597775